{
    "type": "genome",
    "identifier": "GCA_018436825.1",
    "organism": "Halanaerobiales bacterium",
    "title": "Halanaerobiales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018436825.1",
        "bioproject": "PRJNA655520",
        "biosample": "SAMN16055996",
        "wgs_master": "JAHDKQ000000000.1",
        "refseq_category": "na",
        "taxid": "2094029",
        "species_taxid": "2094029",
        "organism_name": "Halanaerobiales bacterium",
        "infraspecific_name": "",
        "isolate": "LM3-B11.1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/21",
        "asm_name": "LM3",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/436/825/GCA_018436825.1_LM3",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-21",
    "dateModified": "2021-05-21",
    "datePublished": "2021-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halanaerobiales bacterium"
        ],
        "sample_taxid": [
            "2094029"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Livermore, CA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.397 MB",
        "sample_ph_range": {
            "min": 7.0,
            "max": 7.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4900760",
        "Number of Sequences": "689",
        "Longest Sequences (bp)": "59805",
        "N50 (bp)": "10289",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.9",
        "Number of CDSs": "3704",
        "Average Protein Length": "293.8",
        "Coding Ratio (%)": "66.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "14"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Anoxybacter fermentans",
                "strain": "strain=DY22613",
                "accession": "GCA_003991135.1",
                "taxid": 1323375,
                "species_taxid": 1323375,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4785,
                "matched_fragments": 106,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016841825.1",
                "gtdb_species": "s__JAENYK01 sp016841825",
                "ani": 99.3138,
                "matched_fragments": 1205,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__DY22613;f__DY22613;g__JAENYK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.30",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003991135.1",
                "gtdb_species": "s__Anoxybacter fermentans",
                "ani": 76.4609,
                "matched_fragments": 107,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__DY22613;f__DY22613;g__Anoxybacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.269,
        "cell_length": 0.509,
        "doubling_h": 0.558,
        "growth_tmp": 37.868,
        "optimum_tmp": 39.611,
        "optimum_ph": 8.7,
        "genome_size": 2895734.46,
        "gc_content": 33.359,
        "coding_genes": 2295.266,
        "rRNA16S_genes": 4.4,
        "tRNA_genes": 62.4,
        "gram_stain": 0.08,
        "sporulation": 0.416,
        "motility": 0.625,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.75,
        "thermophilic_range_tmp": 0.25,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_F",
        "c__Halanaerobiia",
        "o__DY22613",
        "f__DY22613",
        "g__JAENYK01",
        "s__JAENYK01 sp016841825"
    ],
    "_genome_taxon": [
        "Halanaerobiales",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_F",
        "c__Halanaerobiia",
        "o__DY22613",
        "f__DY22613",
        "g__JAENYK01",
        "s__JAENYK01 sp016841825",
        "Bacteria",
        "Bacillota",
        "F",
        "Halanaerobiia",
        "DY22613",
        "DY22613",
        "JAENYK01",
        "JAENYK01",
        "sp016841825"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        },
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}