{ "type": "genome", "identifier": "GCA_018456185.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Stanford University School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018456185.1", "bioproject": "PRJNA174530", "biosample": "SAMN18995129", "wgs_master": "JAGYHR000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "bin12", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/24", "asm_name": "ASM1845618v1", "submitter": "Stanford University School of Medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/456/185/GCA_018456185.1_ASM1845618v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-24", "dateModified": "2021-05-24", "datePublished": "2021-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [ "Tursiops truncatus (bottlenose dolphin)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: San Diego Bay, CA" ], "sample_host_location_id": [], "data_size": "0.915 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.06, "contamination": 24.48, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3272710", "Number of Sequences": "204", "Longest Sequences (bp)": "104534", "N50 (bp)": "23600", "Gap Ratio (%)": "0.042595", "GCcontent (%)": "34.2", "Number of CDSs": "2871", "Average Protein Length": "318.1", "Coding Ratio (%)": "83.7", "Number of rRNAs": "2", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tenacibaculum lutimaris", "strain": "strain=DSM 16505", "accession": "GCA_003610735.1", "taxid": 285258, "species_taxid": 285258, "relation_to_type": "type", "validated": true, "ani": 77.0693, "matched_fragments": 51, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum discolor", "strain": "strain=DSM 18842", "accession": "GCA_003664185.1", "taxid": 361581, "species_taxid": 361581, "relation_to_type": "type", "validated": true, "ani": 76.4925, "matched_fragments": 58, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oricola", "strain": "strain=DSM 24956", "accession": "GCA_900106565.1", "taxid": 762486, "species_taxid": 762486, "relation_to_type": "type", "validated": true, "ani": 76.4609, "matched_fragments": 88, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum jejuense", "strain": "strain=type strain: KCTC 22618", "accession": "GCA_900198195.1", "taxid": 584609, "species_taxid": 584609, "relation_to_type": "type", "validated": true, "ani": 76.4515, "matched_fragments": 50, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum singaporense", "strain": "strain=DSM 106434", "accession": "GCA_003867015.1", "taxid": 2358479, "species_taxid": 2358479, "relation_to_type": "type", "validated": true, "ani": 76.3951, "matched_fragments": 68, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 76.3526, "matched_fragments": 59, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter agarilyticus", "strain": "strain=DSM 29150", "accession": "GCA_900188235.1", "taxid": 1109740, "species_taxid": 1109740, "relation_to_type": "type", "validated": true, "ani": 76.3454, "matched_fragments": 80, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 76.2324, "matched_fragments": 74, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter profundi", "strain": "strain=LP1", "accession": "GCA_001543325.1", "taxid": 1622118, "species_taxid": 1622118, "relation_to_type": "type", "validated": true, "ani": 76.2168, "matched_fragments": 81, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 76.1619, "matched_fragments": 63, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 76.0974, "matched_fragments": 53, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureivirga marina", "strain": "strain=LMG 26721", "accession": "GCA_015767265.1", "taxid": 1182451, "species_taxid": 1182451, "relation_to_type": "type", "validated": true, "ani": 76.0469, "matched_fragments": 69, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oceani", "strain": "strain=325-5", "accession": "GCA_003384935.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 76.0256, "matched_fragments": 95, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oceani", "strain": "strain=JCM30924", "accession": "GCA_003426875.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 76.0104, "matched_fragments": 96, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum luteum", "strain": "strain=SM1352", "accession": "GCA_003449015.1", "taxid": 1548456, "species_taxid": 1548456, "relation_to_type": "type", "validated": true, "ani": 75.882, "matched_fragments": 60, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum holothuriorum", "strain": "strain=S2-2", "accession": "GCA_002120225.1", "taxid": 1635173, "species_taxid": 1635173, "relation_to_type": "type", "validated": true, "ani": 75.88, "matched_fragments": 68, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter filamentus", "strain": "strain=ATCC 700397", "accession": "GCA_002943715.1", "taxid": 53483, "species_taxid": 53483, "relation_to_type": "type", "validated": true, "ani": 75.8754, "matched_fragments": 66, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter sejongensis", "strain": "strain=KCTC 23670", "accession": "GCA_002814075.1", "taxid": 985043, "species_taxid": 985043, "relation_to_type": "type", "validated": true, "ani": 75.7698, "matched_fragments": 83, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=LMG 26671", "accession": "GCA_020532745.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 75.7446, "matched_fragments": 63, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=NBRC 108759", "accession": "GCA_002954685.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 75.692, "matched_fragments": 66, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 75.6572, 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