{
    "type": "genome",
    "identifier": "GCA_018606705.1",
    "organism": "Malawimonas sp.",
    "title": "Malawimonas sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Utah",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018606705.1",
        "bioproject": "PRJNA672823",
        "biosample": "SAMN18877715",
        "wgs_master": "JAGXRI000000000.1",
        "refseq_category": "representative genome",
        "taxid": "2152667",
        "species_taxid": "2152667",
        "organism_name": "Malawimonas sp.",
        "infraspecific_name": "",
        "isolate": "CROMO_A_91",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/01",
        "asm_name": "ASM1860670v1",
        "submitter": "University of Utah",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/606/705/GCA_018606705.1_ASM1860670v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-01",
    "dateModified": "2021-06-01",
    "datePublished": "2021-06-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Malawimonas sp."
        ],
        "sample_taxid": [
            "2152667"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:California"
        ],
        "sample_host_location_id": [],
        "data_size": "1.086 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 69.21,
        "contamination": 4.5,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3544022",
        "Number of Sequences": "428",
        "Longest Sequences (bp)": "93862",
        "N50 (bp)": "9920",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.0",
        "Number of CDSs": "2931",
        "Average Protein Length": "314.4",
        "Coding Ratio (%)": "78.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Leptospira levettii",
                "strain": "strain=MCA2-B-A1",
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                "species_taxid": 2023178,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1002,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leptospira ellinghausenii",
                "strain": "strain=E18",
                "accession": "GCA_003114815.1",
                "taxid": 1917822,
                "species_taxid": 1917822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.1185,
                "matched_fragments": 897,
                "total_fragments": 1002,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira biflexa",
                "strain": "strain=Patoc 1 (Paris)",
                "accession": "GCA_000017685.1",
                "taxid": 172,
                "species_taxid": 172,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8668,
                "matched_fragments": 705,
                "total_fragments": 1002,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira yanagawae",
                "strain": "strain=Sao Paulo",
                "accession": "GCA_000332475.2",
                "taxid": 293069,
                "species_taxid": 293069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4942,
                "matched_fragments": 687,
                "total_fragments": 1002,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira meyeri",
                "strain": "strain=DSM 21537",
                "accession": "GCA_004368965.1",
                "taxid": 29508,
                "species_taxid": 29508,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.558,
                "matched_fragments": 561,
                "total_fragments": 1002,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira harrisiae",
                "strain": "strain=FH2-B-A1",
                "accession": "GCA_002811945.1",
                "taxid": 2023189,
                "species_taxid": 2023189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3635,
                "matched_fragments": 559,
                "total_fragments": 1002,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira abararensis",
                "strain": "strain=201903074",
                "accession": "GCA_016918735.1",
                "taxid": 2810036,
                "species_taxid": 2810036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3585,
                "matched_fragments": 530,
                "total_fragments": 1002,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira brenneri",
                "strain": "strain=JW2-C-A2",
                "accession": "GCA_002812125.1",
                "taxid": 2023182,
                "species_taxid": 2023182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2355,
                "matched_fragments": 528,
                "total_fragments": 1002,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira chreensis",
                "strain": "strain=201903075",
                "accession": "GCA_016919165.1",
                "taxid": 2810035,
                "species_taxid": 2810035,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2246,
                "matched_fragments": 550,
                "total_fragments": 1002,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 69.21,
            "contamination": 4.5,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002812085.1",
                "gtdb_species": "s__Leptospira_A levettii",
                "ani": 98.1796,
                "matched_fragments": 875,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003114815.1",
                "gtdb_species": "s__Leptospira_A ellinghausenii",
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                "matched_fragments": 897,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016742255.1",
                "gtdb_species": "s__Leptospira_A sp016742255",
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                "matched_fragments": 846,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004769665.1",
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                "ani": 83.7983,
                "matched_fragments": 696,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004769525.1",
                "gtdb_species": "s__Leptospira_A bouyouniensis",
                "ani": 83.0554,
                "matched_fragments": 740,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "99.07",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000017685.1",
                "gtdb_species": "s__Leptospira_A biflexa",
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                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_A",
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                "mean_intra_species_ani": "98.66",
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                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000332475.2",
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                "matched_fragments": 686,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.50",
                "min_intra_species_ani": "98.50",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004770905.1",
                "gtdb_species": "s__Leptospira_A bandrabouensis",
                "ani": 80.4231,
                "matched_fragments": 564,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
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                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Leptospirae",
        "o__Leptospirales",
        "f__Leptospiraceae",
        "g__Leptospira_A",
        "s__Leptospira_A levettii"
    ],
    "_genome_taxon": [
        "Malawimonas",
        "sp.",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Leptospirae",
        "o__Leptospirales",
        "f__Leptospiraceae",
        "g__Leptospira_A",
        "s__Leptospira_A levettii",
        "Bacteria",
        "Spirochaetota",
        "Leptospirae",
        "Leptospirales",
        "Leptospiraceae",
        "Leptospira",
        "A",
        "Leptospira",
        "A",
        "levettii"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}