{ "type": "genome", "identifier": "GCA_018607005.1", "organism": "Pseudomonas aeruginosa", "title": "Pseudomonas aeruginosa", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "Cleveland Clinic", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018607005.1", "bioproject": "PRJNA717274", "biosample": "SAMN18492359", "wgs_master": "JAHCUI000000000.1", "refseq_category": "na", "taxid": "287", "species_taxid": "287", "organism_name": "Pseudomonas aeruginosa", "infraspecific_name": "", "isolate": "1_20", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/01", "asm_name": "ASM1860700v1", "submitter": "Cleveland Clinic", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/607/005/GCA_018607005.1_ASM1860700v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-01", "dateModified": "2021-06-01", "datePublished": "2021-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas aeruginosa" ], "sample_taxid": [ "287" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Cleveland" ], "sample_host_location_id": [], "data_size": "1.145 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 25.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4274168", "Number of Sequences": "74", "Longest Sequences (bp)": "3227019", "N50 (bp)": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 80.0756, "matched_fragments": 541, "total_fragments": 1395, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 25.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001457615.1", "gtdb_species": "s__Pseudomonas aeruginosa", "ani": 98.7314, "matched_fragments": 1195, "total_fragments": 1395, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.84", "num_clustered_genomes": 5623, "status": "conclusive" }, { "accession": 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