{
    "type": "genome",
    "identifier": "GCA_018607045.1",
    "organism": "Propionimicrobium lymphophilum",
    "title": "Propionimicrobium lymphophilum",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Cleveland Clinic",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018607045.1",
        "bioproject": "PRJNA717274",
        "biosample": "SAMN18492358",
        "wgs_master": "JAHCUH000000000.1",
        "refseq_category": "na",
        "taxid": "33012",
        "species_taxid": "33012",
        "organism_name": "Propionimicrobium lymphophilum",
        "infraspecific_name": "",
        "isolate": "1_1",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/01",
        "asm_name": "ASM1860704v1",
        "submitter": "Cleveland Clinic",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/607/045/GCA_018607045.1_ASM1860704v1",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-01",
    "dateModified": "2021-06-01",
    "datePublished": "2021-06-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Propionimicrobium lymphophilum"
        ],
        "sample_taxid": [
            "33012"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Cleveland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.275 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 45.12,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "966640",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "324296",
        "N50 (bp)": "249258",
        "Gap Ratio (%)": "0.765538",
        "GCcontent (%)": "58.5",
        "Number of CDSs": "858",
        "Average Protein Length": "318.1",
        "Coding Ratio (%)": "84.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "13",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Propionimicrobium lymphophilum",
                "strain": "strain=DSM 4903",
                "accession": "GCA_000423485.1",
                "taxid": 33012,
                "species_taxid": 33012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.4783,
                "matched_fragments": 261,
                "total_fragments": 313,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 45.12,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000423485.1",
                "gtdb_species": "s__Propionimicrobium lymphophilum",
                "ani": 97.4783,
                "matched_fragments": 261,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2186183.0,
        "gc_content": 55.9,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Propionibacteriales",
        "f__Propionibacteriaceae",
        "g__Propionimicrobium",
        "s__Propionimicrobium lymphophilum"
    ],
    "_genome_taxon": [
        "Propionimicrobium",
        "lymphophilum",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Propionibacteriales",
        "f__Propionibacteriaceae",
        "g__Propionimicrobium",
        "s__Propionimicrobium lymphophilum",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Propionibacteriales",
        "Propionibacteriaceae",
        "Propionimicrobium",
        "Propionimicrobium",
        "lymphophilum"
    ],
    "_meo": [
        {
            "id": "MEO_0000516",
            "label": "lower urinary tract"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}