{ "type": "genome", "identifier": "GCA_018607905.1", "organism": "Paracoccaceae bacterium", "title": "Paracoccaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology and Genetics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018607905.1", "bioproject": "PRJNA283041", "biosample": "SAMN14593190", "wgs_master": "JABBAP000000000.1", "refseq_category": "na", "taxid": "1904441", "species_taxid": "1904441", "organism_name": "Paracoccaceae bacterium", "infraspecific_name": "", "isolate": "HE327_NSB064", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/01", "asm_name": "ASM1860790v1", "submitter": "Institute of Microbiology and Genetics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/607/905/GCA_018607905.1_ASM1860790v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-01", "dateModified": "2021-06-01", "datePublished": "2021-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccaceae bacterium" ], "sample_taxid": [ "1904441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: North Sea" ], "sample_host_location_id": [], "data_size": "0.903 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3172758", "Number of Sequences": "76", "Longest Sequences (bp)": "200999", "N50 (bp)": "74472", "Gap Ratio (%)": "0.056733", "GCcontent (%)": "53.2", "Number of CDSs": "3142", "Average Protein Length": "304.4", "Coding Ratio (%)": "90.4", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amylibacter kogurei", "strain": "strain=4G11", "accession": "GCA_002742285.1", "taxid": 1889778, "species_taxid": 1889778, "relation_to_type": "type", "validated": true, "ani": 76.4977, "matched_fragments": 105, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter mediterraneus", "strain": "strain=DSM 12244", "accession": "GCA_003054325.1", "taxid": 83219, "species_taxid": 83219, "relation_to_type": "type", "validated": true, "ani": 76.3235, "matched_fragments": 88, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognatishimia activa", "strain": "strain=CECT 5113", "accession": "GCA_001458335.1", "taxid": 1715691, "species_taxid": 1715691, "relation_to_type": "type", "validated": true, "ani": 76.1494, "matched_fragments": 64, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter litoralis", "strain": "strain=DSM 17584", "accession": "GCA_900103185.1", "taxid": 335975, "species_taxid": 335975, "relation_to_type": "type", "validated": true, "ani": 76.1223, "matched_fragments": 69, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=DSM 101063", "accession": "GCA_013407805.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 76.1033, "matched_fragments": 91, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=MM-124", "accession": "GCA_000622325.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 76.0936, "matched_fragments": 90, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiruegeria litorea", "strain": "strain=CECT 7639", "accession": "GCA_900172225.1", "taxid": 1280831, "species_taxid": 1280831, "relation_to_type": "type", "validated": true, "ani": 76.0156, "matched_fragments": 58, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter marinus", "strain": "strain=DSM 23422", "accession": "GCA_900116285.1", "taxid": 394264, "species_taxid": 394264, "relation_to_type": "type", "validated": true, "ani": 76.0005, "matched_fragments": 68, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter undariae", "strain": "strain=DSM 102234", "accession": "GCA_014196805.1", "taxid": 1563671, "species_taxid": 1563671, "relation_to_type": "type", "validated": true, "ani": 75.9835, "matched_fragments": 73, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=DSM 101015", "accession": "GCA_014197555.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 75.9363, "matched_fragments": 72, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=NB-77", "accession": "GCA_000622385.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 75.9363, "matched_fragments": 72, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia thalassica", "strain": "strain=CECT 7735", "accession": "GCA_001458215.1", "taxid": 1715693, "species_taxid": 1715693, "relation_to_type": "type", "validated": true, "ani": 75.9039, "matched_fragments": 74, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsihalocynthiibacter arcticus", "strain": "strain=PAMC 20958", "accession": "GCA_000812665.2", "taxid": 1579316, "species_taxid": 1579316, "relation_to_type": "type", "validated": true, "ani": 75.9023, "matched_fragments": 57, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nereida ignava", "strain": "strain=DSM 16309", "accession": "GCA_900114125.1", "taxid": 282199, "species_taxid": 282199, "relation_to_type": "type", "validated": true, "ani": 75.8735, "matched_fragments": 60, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nereida ignava", "strain": "strain=CECT 5292", "accession": "GCA_001049735.1", "taxid": 282199, "species_taxid": 282199, "relation_to_type": "type", 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