{ "type": "genome", "identifier": "GCA_018607965.1", "organism": "Planktotalea sp.", "title": "Planktotalea sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology and Genetics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018607965.1", "bioproject": "PRJNA283041", "biosample": "SAMN14593187", "wgs_master": "JABBAM000000000.1", "refseq_category": "na", "taxid": "2029877", "species_taxid": "2029877", "organism_name": "Planktotalea sp.", "infraspecific_name": "", "isolate": "HE327_NSB061", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/01", "asm_name": "ASM1860796v1", "submitter": "Institute of Microbiology and Genetics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/607/965/GCA_018607965.1_ASM1860796v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-01", "dateModified": "2021-06-01", "datePublished": "2021-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Planktotalea sp." ], "sample_taxid": [ "2029877" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: North Sea" ], "sample_host_location_id": [], "data_size": "0.864 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 72.55, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3002828", "Number of Sequences": "178", "Longest Sequences (bp)": "128380", "N50 (bp)": "25017", "Gap Ratio (%)": "0.152023", "GCcontent (%)": "53.1", "Number of CDSs": "2978", "Average Protein Length": "293.7", "Coding Ratio (%)": "87.4", "Number of rRNAs": "1", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planktotalea frisia", "strain": "strain=DSM 23709", "accession": "GCA_003254185.1", "taxid": 696762, "species_taxid": 696762, "relation_to_type": "type", "validated": true, "ani": 79.1883, "matched_fragments": 478, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planktotalea frisia", "strain": "strain=SH6-1", "accession": "GCA_001890925.1", "taxid": 696762, "species_taxid": 696762, "relation_to_type": "type", "validated": true, "ani": 79.1875, "matched_fragments": 480, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planktotalea arctica", "strain": "strain=IMCC9565", "accession": "GCA_002105285.1", "taxid": 1481893, "species_taxid": 1481893, "relation_to_type": "type", "validated": true, "ani": 78.6928, "matched_fragments": 406, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 76.377, "matched_fragments": 94, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=HEL-45", "accession": "GCA_000172095.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 76.3237, "matched_fragments": 96, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia huanghaiensis", "strain": "strain=CY05", "accession": "GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 76.1124, "matched_fragments": 79, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.0536, "matched_fragments": 72, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 75.9908, "matched_fragments": 74, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 75.842, "matched_fragments": 62, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 75.7825, "matched_fragments": 99, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 75.7707, "matched_fragments": 100, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 72.55, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018607965.1", "gtdb_species": "s__Planktotalea sp018607965", "ani": 100.0, "matched_fragments": 906, "total_fragments": 914, "gtdb_taxonomy": 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