{ "type": "genome", "identifier": "GCA_018609965.1", "organism": "Haloferacaceae archaeon", "title": "Haloferacaceae archaeon", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Utah", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018609965.1", "bioproject": "PRJNA522308", "biosample": "SAMN19270123", "wgs_master": "JAHENP000000000.1", "refseq_category": "na", "taxid": "2080321", "species_taxid": "2080321", "organism_name": "Haloferacaceae archaeon", "infraspecific_name": "", "isolate": "BinSanityLC-kmean-bin_53-bin_0-refined_2", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/01", "asm_name": "ASM1860996v1", "submitter": "University of Utah", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/609/965/GCA_018609965.1_ASM1860996v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-01", "dateModified": "2021-06-01", "datePublished": "2021-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Haloferacaceae archaeon" ], "sample_taxid": [ "2080321" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Utah Bonneville Salt Flats" ], "sample_host_location_id": [], "data_size": "0.713 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 82.41, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2612205", "Number of Sequences": "361", "Longest Sequences (bp)": "27207", "N50 (bp)": "8323", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.8", "Number of CDSs": "2320", "Average Protein Length": "275.2", "Coding Ratio (%)": "73.3", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halobaculum gomorrense", "strain": "strain=DSM 9297", "accession": "GCA_900129775.1", "taxid": 43928, "species_taxid": 43928, "relation_to_type": "type", "validated": true, "ani": 77.6931, "matched_fragments": 255, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum roseum", "strain": "strain=CGMCC 1.15501", "accession": "GCA_019880245.1", "taxid": 2175149, "species_taxid": 2175149, "relation_to_type": "type", "validated": true, "ani": 77.5924, "matched_fragments": 278, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum salinum", "strain": "strain=NJ-3-1", "accession": "GCA_013402875.1", "taxid": 2743089, "species_taxid": 2743089, "relation_to_type": "type", "validated": true, "ani": 77.5495, "matched_fragments": 253, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum saliterrae", "strain": "strain=WSA2", "accession": "GCA_009831625.1", "taxid": 2073113, "species_taxid": 2073113, "relation_to_type": "type", "validated": true, "ani": 77.4603, "matched_fragments": 284, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorubrum rutilum", "strain": "strain=YJ-18-S1", "accession": "GCA_024494565.1", "taxid": 1364933, "species_taxid": 1364933, "relation_to_type": "type", "validated": true, "ani": 77.3779, "matched_fragments": 224, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorubrum salinum", "strain": "strain=GX71", "accession": "GCA_024494575.1", "taxid": 767517, "species_taxid": 767517, "relation_to_type": "type", "validated": true, "ani": 77.1213, "matched_fragments": 168, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorubrum cibi", "strain": "strain=DSM 19504", "accession": "GCA_900182635.1", "taxid": 413815, "species_taxid": 413815, "relation_to_type": "type", "validated": true, "ani": 76.9863, "matched_fragments": 196, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorientalis regularis", "strain": "strain=TNN28", "accession": "GCA_023698535.1", "taxid": 660518, "species_taxid": 660518, "relation_to_type": "type", "validated": true, "ani": 76.8309, "matched_fragments": 165, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halegenticoccus soli", "strain": "strain=SYSU A9-0", "accession": "GCA_002844195.1", "taxid": 1985678, "species_taxid": 1985678, "relation_to_type": "type", "validated": true, "ani": 76.7899, "matched_fragments": 199, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorientalis salina", "strain": "strain=NEN8", "accession": "GCA_005049285.1", "taxid": 2932266, "species_taxid": 2932266, "relation_to_type": "type", "validated": true, "ani": 76.7264, "matched_fragments": 152, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorientalis litorea", "strain": "strain=ZY14", "accession": "GCA_023028225.1", "taxid": 2931977, "species_taxid": 2931977, "relation_to_type": "type", "validated": true, "ani": 76.6944, "matched_fragments": 139, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorientalis brevis", "strain": "strain=YC89", "accession": "GCA_023077655.1", "taxid": 1126241, "species_taxid": 1126241, "relation_to_type": "type", "validated": true, "ani": 76.6563, "matched_fragments": 131, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorientalis persicus", "strain": "strain=IBRC-M 10043", "accession": "GCA_900110215.1", "taxid": 1367881, "species_taxid": 1367881, "relation_to_type": "type", "validated": true, "ani": 76.6504, "matched_fragments": 168, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinirubellus salinus", "strain": "strain=ZS-35-S2", "accession": "GCA_025231485.1", "taxid": 1364945, "species_taxid": 1364945, "relation_to_type": "type", "validated": true, "ani": 76.6031, "matched_fragments": 178, "total_fragments": 713, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 82.41, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018609965.1", "gtdb_species": "s__Halobaculum sp018609965", "ani": 100.0, "matched_fragments": 699, "total_fragments": 713, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003020945.1", "gtdb_species": "s__Halobaculum sp003020945", "ani": 78.0545, "matched_fragments": 268, "total_fragments": 713, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013402875.1", "gtdb_species": "s__Halobaculum sp013402875", "ani": 77.5361, "matched_fragments": 254, "total_fragments": 713, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009831625.1", "gtdb_species": "s__Halobaculum sp009831625", "ani": 77.4595, "matched_fragments": 284, "total_fragments": 713, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000336875.1", "gtdb_species": "s__Halorubrum californiense", "ani": 77.1909, "matched_fragments": 221, "total_fragments": 713, "gtdb_taxonomy": 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