{ "type": "genome", "identifier": "GCA_018648085.1", "organism": "Rhodospirillaceae bacterium", "title": "Rhodospirillaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Melbourne", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018648085.1", "bioproject": "PRJNA630981", "biosample": "SAMN14913751", "wgs_master": "JABGRX000000000.1", "refseq_category": "na", "taxid": "1898112", "species_taxid": "1898112", "organism_name": "Rhodospirillaceae bacterium", "infraspecific_name": "", "isolate": "co234_bin9", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/02", "asm_name": "ASM1864808v1", "submitter": "The University of Melbourne", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/648/085/GCA_018648085.1_ASM1864808v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-02", "dateModified": "2021-06-02", "datePublished": "2021-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodospirillaceae bacterium" ], "sample_taxid": [ "1898112" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Vancouver, Saanich Inlet" ], "sample_host_location_id": [], "data_size": "0.936 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.67, "contamination": 14.02, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3251752", "Number of Sequences": "921", "Longest Sequences (bp)": "19311", "N50 (bp)": "4018", "Gap Ratio (%)": "0.017990", "GCcontent (%)": "62.7", "Number of CDSs": "2370", "Average Protein Length": "284.9", "Coding Ratio (%)": "62.3", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 76.3293, "matched_fragments": 79, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum nanhaiense", "strain": "strain=L54-1-50", "accession": "GCA_002148795.1", "taxid": 1909734, "species_taxid": 1909734, "relation_to_type": "type", "validated": true, "ani": 76.2929, "matched_fragments": 61, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 76.268, "matched_fragments": 69, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thiophilum", "strain": "strain=DSM 21654", "accession": "GCA_000960825.1", "taxid": 528244, "species_taxid": 528244, "relation_to_type": "type", "validated": true, "ani": 76.1858, "matched_fragments": 63, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thiophilum", "strain": "strain=BV-S", "accession": "GCA_001305595.1", "taxid": 528244, "species_taxid": 528244, "relation_to_type": "type", "validated": true, "ani": 76.1858, "matched_fragments": 63, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum indicum", "strain": "strain=P24", "accession": "GCA_000299935.1", "taxid": 526216, "species_taxid": 526216, "relation_to_type": "type", "validated": true, "ani": 76.1729, "matched_fragments": 56, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.115, "matched_fragments": 77, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.0854, "matched_fragments": 77, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea sediminum", "strain": "strain=NBU1469", "accession": "GCA_014904705.1", "taxid": 2775867, "species_taxid": 2775867, "relation_to_type": "type", "validated": true, "ani": 76.0314, "matched_fragments": 61, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum caucaseum", "strain": "strain=SO-1", "accession": "GCA_000342045.1", "taxid": 1244869, "species_taxid": 1244869, "relation_to_type": "type", "validated": true, "ani": 76.0283, "matched_fragments": 54, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum agricola", "strain": "strain=CC-HIH038", "accession": "GCA_017876095.1", "taxid": 1720247, "species_taxid": 1720247, "relation_to_type": "type", "validated": true, "ani": 76.0138, "matched_fragments": 66, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum cavernae", "strain": "strain=K2W22B-5", "accession": "GCA_003590795.1", "taxid": 2320860, "species_taxid": 2320860, "relation_to_type": "type", "validated": true, "ani": 75.9234, "matched_fragments": 61, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella pratensis", "strain": "strain=W17", "accession": "GCA_008843145.1", "taxid": 2233999, "species_taxid": 2233999, "relation_to_type": "type", "validated": true, "ani": 75.9116, "matched_fragments": 66, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidongia dinghuensis", "strain": "strain=CGMCC 1.15725", "accession": "GCA_014643535.1", "taxid": 1867774, "species_taxid": 1867774, "relation_to_type": "type", "validated": true, "ani": 75.9105, "matched_fragments": 65, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaustia mangrovi", "strain": "strain=R1DC25", "accession": "GCA_015482775.1", "taxid": 2593653, "species_taxid": 2593653, "relation_to_type": "type", "validated": true, "ani": 75.8524, "matched_fragments": 54, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella massiliensis", "strain": "strain=521", "accession": "GCA_000312425.1", "taxid": 445220, "species_taxid": 445220, "relation_to_type": "type", "validated": true, "ani": 75.7506, "matched_fragments": 51, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella mucosa", "strain": "strain=KEMB 2255-438", "accession": "GCA_016765655.2", "taxid": 1789672, "species_taxid": 1789672, "relation_to_type": "type", "validated": true, "ani": 75.7407, "matched_fragments": 68, "total_fragments": 574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea psychrotolerans", "strain": "strain=1131", "accession": "GCA_002917105.1", "taxid": 1871628, "species_taxid": 1871628, "relation_to_type": "type", "validated": true, "ani": 75.6742, "matched_fragments": 52, 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