{
    "type": "genome",
    "identifier": "GCA_018649845.1",
    "organism": "Nitrosopumilus sp.",
    "title": "Nitrosopumilus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Melbourne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018649845.1",
        "bioproject": "PRJNA630981",
        "biosample": "SAMN14914851",
        "wgs_master": "JABIHD000000000.1",
        "refseq_category": "na",
        "taxid": "2024843",
        "species_taxid": "2024843",
        "organism_name": "Nitrosopumilus sp.",
        "infraspecific_name": "",
        "isolate": "SI053_bin6",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/02",
        "asm_name": "ASM1864984v1",
        "submitter": "The University of Melbourne",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/649/845/GCA_018649845.1_ASM1864984v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-02",
    "dateModified": "2021-06-02",
    "datePublished": "2021-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrosopumilus sp."
        ],
        "sample_taxid": [
            "2024843"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Vancouver, Saanich Inlet"
        ],
        "sample_host_location_id": [],
        "data_size": "0.229 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 77.02,
        "contamination": 0.38,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "828454",
        "Number of Sequences": "164",
        "Longest Sequences (bp)": "27442",
        "N50 (bp)": "5920",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.5",
        "Number of CDSs": "910",
        "Average Protein Length": "223.0",
        "Coding Ratio (%)": "73.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrosopumilus oxyclinae",
                "strain": "strain=HCE1",
                "accession": "GCA_013407165.1",
                "taxid": 1959104,
                "species_taxid": 1959104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4648,
                "matched_fragments": 147,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus cobalaminigenes",
                "strain": "strain=HCA1",
                "accession": "GCA_013407145.1",
                "taxid": 1470066,
                "species_taxid": 1470066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3678,
                "matched_fragments": 143,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus adriaticus",
                "strain": "strain=NF5",
                "accession": "GCA_000956175.1",
                "taxid": 1580092,
                "species_taxid": 1580092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5858,
                "matched_fragments": 144,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus ureiphilus",
                "strain": "strain=PS0",
                "accession": "GCA_013407185.1",
                "taxid": 1470067,
                "species_taxid": 1470067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4036,
                "matched_fragments": 138,
                "total_fragments": 185,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 77.02,
            "contamination": 0.38,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018674605.1",
                "gtdb_species": "s__Nitrosopumilus sp018674605",
                "ani": 98.4413,
                "matched_fragments": 130,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 12,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905616385.1",
                "gtdb_species": "s__Nitrosopumilus sp905616385",
                "ani": 87.6718,
                "matched_fragments": 87,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "96.75",
                "mean_intra_species_af": "0.55",
                "min_intra_species_af": "0.53",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902514095.1",
                "gtdb_species": "s__Nitrosopumilus sp902514095",
                "ani": 86.9957,
                "matched_fragments": 112,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001437625.1",
                "gtdb_species": "s__Nitrosopumilus sp001437625",
                "ani": 86.87,
                "matched_fragments": 148,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "95.42",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_905612295.1",
                "gtdb_species": "s__Nitrosopumilus sp905612295",
                "ani": 86.5693,
                "matched_fragments": 120,
                "total_fragments": 185,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.741,
        "cell_length": -0.254,
        "doubling_h": 1.462,
        "growth_tmp": null,
        "optimum_tmp": 29.666,
        "optimum_ph": null,
        "genome_size": 1735691.5,
        "gc_content": 33.605,
        "coding_genes": 2066.333,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 42.0,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrosopumilaceae",
        "g__Nitrosopumilus",
        "s__Nitrosopumilus sp018674605"
    ],
    "_genome_taxon": [
        "Nitrosopumilus",
        "sp.",
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrosopumilaceae",
        "g__Nitrosopumilus",
        "s__Nitrosopumilus sp018674605",
        "Archaea",
        "Thermoproteota",
        "Nitrososphaeria",
        "Nitrososphaerales",
        "Nitrosopumilaceae",
        "Nitrosopumilus",
        "Nitrosopumilus",
        "sp018674605"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}