{ "type": "genome", "identifier": "GCA_018654345.1", "organism": "Cryomorphaceae bacterium", "title": "Cryomorphaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Melbourne", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018654345.1", "bioproject": "PRJNA630981", "biosample": "SAMN14914972", "wgs_master": "JABILU000000000.1", "refseq_category": "na", "taxid": "1898111", "species_taxid": "1898111", "organism_name": "Cryomorphaceae bacterium", "infraspecific_name": "", "isolate": "SI054_bin8", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/02", "asm_name": "ASM1865434v1", "submitter": "The University of Melbourne", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/654/345/GCA_018654345.1_ASM1865434v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-02", "dateModified": "2021-06-02", "datePublished": "2021-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Cryomorphaceae bacterium" ], "sample_taxid": [ "1898111" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Vancouver, Saanich Inlet" ], "sample_host_location_id": [], "data_size": "0.349 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 2.08, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1255098", "Number of Sequences": "84", "Longest Sequences (bp)": "102450", "N50 (bp)": "35003", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.0", "Number of CDSs": "1123", "Average Protein Length": "329.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "1", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.83, "contamination": 2.08, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_018646865.1", "gtdb_species": "s__MED-G11 sp014239615", "ani": 99.7982, "matched_fragments": 346, "total_fragments": 377, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.80", "num_clustered_genomes": 17, "status": "conclusive" }, { "accession": "GCA_902514615.1", "gtdb_species": "s__MED-G11 sp902514615", "ani": 86.7379, "matched_fragments": 253, "total_fragments": 377, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004214015.1", "gtdb_species": "s__MED-G11 sp004214015", "ani": 86.4064, "matched_fragments": 216, "total_fragments": 377, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902509805.1", "gtdb_species": "s__MED-G11 sp902509805", "ani": 85.5459, "matched_fragments": 168, "total_fragments": 377, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "97.79", "mean_intra_species_af": "0.58", "min_intra_species_af": "0.58", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016777325.1", "gtdb_species": "s__MED-G11 sp016777325", "ani": 85.3799, "matched_fragments": 217, "total_fragments": 377, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014239665.1", "gtdb_species": "s__MED-G11 sp014239665", "ani": 84.2873, "matched_fragments": 272, "total_fragments": 377, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.49", "min_intra_species_ani": "96.27", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.77", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_002457075.1", "gtdb_species": "s__MED-G11 sp002457075", "ani": 83.6328, "matched_fragments": 224, "total_fragments": 377, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_004213645.1", "gtdb_species": "s__MED-G11 sp004213645", "ani": 80.4019, "matched_fragments": 200, "total_fragments": 377, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "97.96", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.74", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.44, "cell_length": 0.217, "doubling_h": null, "growth_tmp": 20.0, "optimum_tmp": 30.5, "optimum_ph": 7.0, "genome_size": 4000057.75, "gc_content": 40.2, "coding_genes": 3467.0, "rRNA16S_genes": 2.0, "tRNA_genes": 37.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Marisimplicoccus", "s__Marisimplicoccus sp014239615" ], "_genome_taxon": [ "Cryomorphaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Marisimplicoccus", "s__Marisimplicoccus sp014239615", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Marisimplicoccus", "Marisimplicoccus", "sp014239615" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }