{
    "type": "genome",
    "identifier": "GCA_018655255.1",
    "organism": "Nitrospina sp.",
    "title": "Nitrospina sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Melbourne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018655255.1",
        "bioproject": "PRJNA630981",
        "biosample": "SAMN14914926",
        "wgs_master": "JABIKA000000000.1",
        "refseq_category": "na",
        "taxid": "2024844",
        "species_taxid": "2024844",
        "organism_name": "Nitrospina sp.",
        "infraspecific_name": "",
        "isolate": "SI054_bin38",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/02",
        "asm_name": "ASM1865525v1",
        "submitter": "The University of Melbourne",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/655/255/GCA_018655255.1_ASM1865525v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-02",
    "dateModified": "2021-06-02",
    "datePublished": "2021-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrospina sp."
        ],
        "sample_taxid": [
            "2024844"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Vancouver, Saanich Inlet"
        ],
        "sample_host_location_id": [],
        "data_size": "0.927 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.57,
        "contamination": 8.33,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3230342",
        "Number of Sequences": "74",
        "Longest Sequences (bp)": "253617",
        "N50 (bp)": "75465",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.5",
        "Number of CDSs": "2937",
        "Average Protein Length": "313.3",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 97.57,
            "contamination": 8.33,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018673915.1",
                "gtdb_species": "s__LS-NOB sp018673915",
                "ani": 99.9167,
                "matched_fragments": 935,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__LS-NOB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018664975.1",
                "gtdb_species": "s__LS-NOB sp018664975",
                "ani": 86.7522,
                "matched_fragments": 652,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__LS-NOB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003545625.1",
                "gtdb_species": "s__LS-NOB sp003545625",
                "ani": 80.3017,
                "matched_fragments": 387,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__LS-NOB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "98.65",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018653085.1",
                "gtdb_species": "s__LS-NOB sp018653085",
                "ani": 80.2252,
                "matched_fragments": 663,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__LS-NOB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.81",
                "min_intra_species_ani": "99.70",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_001542995.1",
                "gtdb_species": "s__LS-NOB sp001542995",
                "ani": 79.4731,
                "matched_fragments": 536,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__LS-NOB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014382285.1",
                "gtdb_species": "s__LS-NOB sp014382285",
                "ani": 78.9199,
                "matched_fragments": 487,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__LS-NOB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012961055.1",
                "gtdb_species": "s__LS-NOB sp012961055",
                "ani": 78.588,
                "matched_fragments": 241,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__LS-NOB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905612265.1",
                "gtdb_species": "s__LS-NOB sp905612265",
                "ani": 77.8589,
                "matched_fragments": 139,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__LS-NOB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018702695.1",
                "gtdb_species": "s__LS-NOB sp018702695",
                "ani": 77.2702,
                "matched_fragments": 310,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__LS-NOB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.34",
                "min_intra_species_ani": "99.32",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Nitrospinota",
        "c__Nitrospinia",
        "o__Nitrospinales",
        "f__VA-1",
        "g__LS-NOB",
        "s__LS-NOB sp018673915"
    ],
    "_genome_taxon": [
        "Nitrospina",
        "sp.",
        "d__Bacteria",
        "p__Nitrospinota",
        "c__Nitrospinia",
        "o__Nitrospinales",
        "f__VA-1",
        "g__LS-NOB",
        "s__LS-NOB sp018673915",
        "Bacteria",
        "Nitrospinota",
        "Nitrospinia",
        "Nitrospinales",
        "VA-1",
        "LS-NOB",
        "LS-NOB",
        "sp018673915"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}