{ "type": "genome", "identifier": "GCA_018657695.1", "organism": "Phycisphaerae bacterium", "title": "Phycisphaerae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Melbourne", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018657695.1", "bioproject": "PRJNA630981", "biosample": "SAMN14914551", "wgs_master": "JABHWR000000000.1", "refseq_category": "na", "taxid": "2026778", "species_taxid": "2026778", "organism_name": "Phycisphaerae bacterium", "infraspecific_name": "", "isolate": "SI047_bin17", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/02", "asm_name": "ASM1865769v1", "submitter": "The University of Melbourne", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/657/695/GCA_018657695.1_ASM1865769v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-02", "dateModified": "2021-06-02", "datePublished": "2021-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Phycisphaerae bacterium" ], "sample_taxid": [ "2026778" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Vancouver, Saanich Inlet" ], "sample_host_location_id": [], "data_size": "0.460 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 88.34, "contamination": 12.5, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1594352", "Number of Sequences": "268", "Longest Sequences (bp)": "20876", "N50 (bp)": "7258", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.2", "Number of CDSs": "1200", "Average Protein Length": "321.9", "Coding Ratio (%)": "72.7", "Number of rRNAs": "1", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 88.34, "contamination": 12.5, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018701395.1", "gtdb_species": "s__GCA-002718515 sp018701395", "ani": 99.4134, "matched_fragments": 379, "total_fragments": 399, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__GCA-002718515", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.41", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_012965315.1", "gtdb_species": "s__GCA-002718515 sp012965315", "ani": 91.8661, "matched_fragments": 343, "total_fragments": 399, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__GCA-002718515", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.67", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_014238785.1", "gtdb_species": "s__GCA-002718515 sp014238785", "ani": 79.3521, "matched_fragments": 122, "total_fragments": 399, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__GCA-002718515", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018665385.1", "gtdb_species": "s__GCA-002718515 sp018665385", "ani": 78.1859, "matched_fragments": 63, "total_fragments": 399, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__GCA-002718515", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.09", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002689385.1", "gtdb_species": "s__GCA-002718515 sp002689385", "ani": 78.0962, "matched_fragments": 115, "total_fragments": 399, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__GCA-002718515", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018656645.1", "gtdb_species": "s__GCA-002718515 sp018656645", "ani": 77.6995, "matched_fragments": 51, "total_fragments": 399, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__GCA-002718515", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014381385.1", "gtdb_species": "s__GCA-002718515 sp014381385", "ani": 77.316, "matched_fragments": 80, "total_fragments": 399, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__GCA-002718515", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018657585.1", "gtdb_species": "s__GCA-002718515 sp018657585", "ani": 77.172, "matched_fragments": 73, "total_fragments": 399, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__GCA-002718515", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014381555.1", "gtdb_species": "s__GCA-002718515 sp014381555", "ani": 76.9382, "matched_fragments": 62, "total_fragments": 399, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__GCA-002718515", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__Phycisphaerae", "o__Phycisphaerales", "f__SM1A02", "g__GCA-002718515", "s__GCA-002718515 sp018701395" ], "_genome_taxon": [ "Phycisphaerae", "bacterium", "d__Bacteria", "p__Planctomycetota", "c__Phycisphaerae", "o__Phycisphaerales", "f__SM1A02", "g__GCA-002718515", "s__GCA-002718515 sp018701395", "Bacteria", "Planctomycetota", "Phycisphaerae", "Phycisphaerales", "SM1A02", "GCA-002718515", "GCA-002718515", "sp018701395" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }