{
    "type": "genome",
    "identifier": "GCA_018659205.1",
    "organism": "Rhodospirillaceae bacterium",
    "title": "Rhodospirillaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Melbourne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018659205.1",
        "bioproject": "PRJNA630981",
        "biosample": "SAMN14915676",
        "wgs_master": "JABJMW000000000.1",
        "refseq_category": "na",
        "taxid": "1898112",
        "species_taxid": "1898112",
        "organism_name": "Rhodospirillaceae bacterium",
        "infraspecific_name": "",
        "isolate": "SI075_bin147",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/02",
        "asm_name": "ASM1865920v1",
        "submitter": "The University of Melbourne",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/659/205/GCA_018659205.1_ASM1865920v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-02",
    "dateModified": "2021-06-02",
    "datePublished": "2021-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodospirillaceae bacterium"
        ],
        "sample_taxid": [
            "1898112"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Vancouver, Saanich Inlet"
        ],
        "sample_host_location_id": [],
        "data_size": "1.011 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 62.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3540959",
        "Number of Sequences": "62",
        "Longest Sequences (bp)": "367306",
        "N50 (bp)": "95178",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.8",
        "Number of CDSs": "3348",
        "Average Protein Length": "317.9",
        "Coding Ratio (%)": "90.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Magnetovibrio blakemorei",
                "strain": "strain=MV-1",
                "accession": "GCA_001746755.1",
                "taxid": 28181,
                "species_taxid": 28181,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9509,
                "matched_fragments": 59,
                "total_fragments": 1149,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum gryphiswaldense",
                "strain": "strain=MSR-1",
                "accession": "GCA_002995515.1",
                "taxid": 55518,
                "species_taxid": 55518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.859,
                "matched_fragments": 65,
                "total_fragments": 1149,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Varunaivibrio sulfuroxidans",
                "strain": "strain=DSM 101688",
                "accession": "GCA_004341725.1",
                "taxid": 1773489,
                "species_taxid": 1773489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7236,
                "matched_fragments": 67,
                "total_fragments": 1149,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum moscoviense",
                "strain": "strain=BB-1",
                "accession": "GCA_001650635.1",
                "taxid": 1437059,
                "species_taxid": 1437059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6267,
                "matched_fragments": 64,
                "total_fragments": 1149,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum gryphiswaldense",
                "strain": "strain=MSR-1",
                "accession": "GCA_000513295.1",
                "taxid": 55518,
                "species_taxid": 55518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.584,
                "matched_fragments": 67,
                "total_fragments": 1149,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caenispirillum salinarum",
                "strain": "strain=AK4",
                "accession": "GCA_000315795.1",
                "taxid": 859058,
                "species_taxid": 859058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4033,
                "matched_fragments": 51,
                "total_fragments": 1149,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum caucaseum",
                "strain": "strain=SO-1",
                "accession": "GCA_000342045.1",
                "taxid": 1244869,
                "species_taxid": 1244869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1847,
                "matched_fragments": 63,
                "total_fragments": 1149,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 62.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018662005.1",
                "gtdb_species": "s__JACNJU01 sp018662005",
                "ani": 99.95,
                "matched_fragments": 1082,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__2-02-FULL-58-16_A;g__JACNJU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014382375.1",
                "gtdb_species": "s__JACNJU01 sp014382375",
                "ani": 86.4501,
                "matched_fragments": 787,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__2-02-FULL-58-16_A;g__JACNJU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.73",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016776705.1",
                "gtdb_species": "s__JADHSW01 sp016776705",
                "ani": 77.764,
                "matched_fragments": 273,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__2-02-FULL-58-16_A;g__JADHSW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018671895.1",
                "gtdb_species": "s__JABHGV01 sp018671895",
                "ani": 77.11,
                "matched_fragments": 198,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__2-02-FULL-58-16_A;g__JABHGV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_013204045.1",
                "gtdb_species": "s__JABMOQ01 sp013204045",
                "ani": 77.0979,
                "matched_fragments": 213,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__2-02-FULL-58-16_A;g__JABMOQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016776525.1",
                "gtdb_species": "s__JADHTD01 sp016776525",
                "ani": 76.4303,
                "matched_fragments": 71,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__JADHTD01;g__JADHTD01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000968135.1",
                "gtdb_species": "s__Magnetospira sp000968135",
                "ani": 76.0135,
                "matched_fragments": 62,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospiraceae;g__Magnetospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013349695.1",
                "gtdb_species": "s__GCA-2686765 sp013349695",
                "ani": 75.9386,
                "matched_fragments": 61,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__2-02-FULL-58-16;g__GCA-2686765",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.65",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002706405.1",
                "gtdb_species": "s__UBA1479 sp002706405",
                "ani": 75.9225,
                "matched_fragments": 66,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA1479",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002325375.1",
                "gtdb_species": "s__UBA1479 sp002325375",
                "ani": 75.8829,
                "matched_fragments": 90,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA1479",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "96.43",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_014859895.1",
                "gtdb_species": "s__JACZKS01 sp014859895",
                "ani": 75.8515,
                "matched_fragments": 57,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__JAHDSF01;g__JACZKS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002686255.1",
                "gtdb_species": "s__Casp-alpha2 sp002686255",
                "ani": 75.7053,
                "matched_fragments": 86,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__Casp-alpha2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017640505.1",
                "gtdb_species": "s__UBA4479 sp017640505",
                "ani": 75.3564,
                "matched_fragments": 56,
                "total_fragments": 1149,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA4479",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.124,
        "cell_length": 0.412,
        "doubling_h": 0.931,
        "growth_tmp": 29.068,
        "optimum_tmp": 30.167,
        "optimum_ph": 7.012,
        "genome_size": 4958622.479,
        "gc_content": 62.84,
        "coding_genes": 4573.287,
        "rRNA16S_genes": 4.82,
        "tRNA_genes": 64.75,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.839,
        "range_salinity": 0.666,
        "facultative_respiration": 0.174,
        "anaerobic_respiration": 0.158,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": 0.916,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.083,
        "bacillus_cell_shape": 0.509,
        "coccus_cell_shape": 0.018,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.036,
        "spiral_cell_shape": 0.436
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodospirillales_A",
        "f__JABHCV01",
        "g__JACNJU01",
        "s__JACNJU01 sp018662005"
    ],
    "_genome_taxon": [
        "Rhodospirillaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodospirillales_A",
        "f__JABHCV01",
        "g__JACNJU01",
        "s__JACNJU01 sp018662005",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhodospirillales",
        "A",
        "JABHCV01",
        "JACNJU01",
        "JACNJU01",
        "sp018662005"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}