{ "type": "genome", "identifier": "GCA_018659355.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Melbourne", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018659355.1", "bioproject": "PRJNA630981", "biosample": "SAMN14915667", "wgs_master": "JABJMN000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "SI075_bin139", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/02", "asm_name": "ASM1865935v1", "submitter": "The University of Melbourne", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/659/355/GCA_018659355.1_ASM1865935v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-02", "dateModified": "2021-06-02", "datePublished": "2021-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Vancouver, Saanich Inlet" ], "sample_host_location_id": [], "data_size": "0.588 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.79, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2079932", "Number of Sequences": "163", "Longest Sequences (bp)": "119899", "N50 (bp)": "21040", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.9", "Number of CDSs": "1696", "Average Protein Length": "337.1", "Coding Ratio (%)": "82.5", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marixanthomonas ophiurae", "strain": "strain=KMM 3046", "accession": "GCA_003413745.1", "taxid": 387659, "species_taxid": 387659, "relation_to_type": "type", "validated": true, "ani": 77.0258, "matched_fragments": 73, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter antarcticus", "strain": "strain=DSM 23424", "accession": "GCA_003688405.1", "taxid": 442714, "species_taxid": 442714, "relation_to_type": "type", "validated": true, "ani": 76.7207, "matched_fragments": 65, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=KCTC 12104", "accession": "GCA_014651275.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 76.6548, "matched_fragments": 98, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=DSM 16195", "accession": "GCA_900102055.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 76.5791, "matched_fragments": 97, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 76.5763, "matched_fragments": 54, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita antarctica", "strain": "strain=SW49", "accession": "GCA_007997155.1", "taxid": 153266, "species_taxid": 153266, "relation_to_type": "type", "validated": true, "ani": 76.544, "matched_fragments": 56, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella haliclonae", "strain": "strain=CCM 8681", "accession": "GCA_014635865.1", "taxid": 2048558, "species_taxid": 2048558, "relation_to_type": "type", "validated": true, "ani": 76.4825, "matched_fragments": 51, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 76.4554, "matched_fragments": 57, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 76.2116, "matched_fragments": 62, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix mariniflava", "strain": "strain=AKS432", "accession": "GCA_001418015.1", "taxid": 342955, "species_taxid": 342955, "relation_to_type": "type", "validated": true, "ani": 76.2076, "matched_fragments": 64, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter mikhailovii", "strain": "strain=KCTC 12710", "accession": "GCA_014651495.1", "taxid": 425498, "species_taxid": 425498, "relation_to_type": "type", "validated": true, "ani": 76.1782, "matched_fragments": 56, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia myxarmorum", "strain": "strain=ADA-4", "accession": "GCA_008086205.1", "taxid": 291186, "species_taxid": 291186, "relation_to_type": "type", "validated": true, "ani": 76.1683, "matched_fragments": 58, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia argentinensis", "strain": "strain=JUB59", "accession": "GCA_000224335.2", "taxid": 456455, "species_taxid": 456455, "relation_to_type": "type", "validated": true, "ani": 76.1659, "matched_fragments": 55, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter citreus", "strain": "strain=1KV19", "accession": "GCA_003260195.1", "taxid": 2138210, "species_taxid": 2138210, "relation_to_type": "type", "validated": true, "ani": 76.0891, "matched_fragments": 69, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter alginicilyticus", "strain": "strain=HZ22", "accession": "GCA_001310225.1", "taxid": 1736674, "species_taxid": 1736674, "relation_to_type": "type", "validated": true, "ani": 76.0103, "matched_fragments": 79, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter flavus", "strain": "strain=DSM 27993", "accession": "GCA_900188355.1", "taxid": 691689, "species_taxid": 691689, "relation_to_type": "type", "validated": true, "ani": 75.9953, "matched_fragments": 62, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 75.9336, "matched_fragments": 56, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix algicola", "strain": "strain=AKS293", "accession": "GCA_001418085.1", "taxid": 342954, "species_taxid": 342954, "relation_to_type": "type", "validated": true, "ani": 75.8689, "matched_fragments": 63, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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