{
    "type": "genome",
    "identifier": "GCA_018673135.1",
    "organism": "Alphaproteobacteria bacterium",
    "title": "Alphaproteobacteria bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Melbourne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018673135.1",
        "bioproject": "PRJNA630981",
        "biosample": "SAMN14914049",
        "wgs_master": "JABHDJ000000000.1",
        "refseq_category": "na",
        "taxid": "1913988",
        "species_taxid": "1913988",
        "organism_name": "Alphaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "SI037_bin13",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/02",
        "asm_name": "ASM1867313v1",
        "submitter": "The University of Melbourne",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/673/135/GCA_018673135.1_ASM1867313v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-02",
    "dateModified": "2021-06-02",
    "datePublished": "2021-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alphaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "1913988"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Vancouver, Saanich Inlet"
        ],
        "sample_host_location_id": [],
        "data_size": "0.700 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 80.56,
        "contamination": 12.5,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2439109",
        "Number of Sequences": "552",
        "Longest Sequences (bp)": "49190",
        "N50 (bp)": "4848",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.8",
        "Number of CDSs": "1942",
        "Average Protein Length": "270.5",
        "Coding Ratio (%)": "64.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Azospirillum cavernae",
                "strain": "strain=K2W22B-5",
                "accession": "GCA_003590795.1",
                "taxid": 2320860,
                "species_taxid": 2320860,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 60,
                "total_fragments": 512,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelagibius marinus",
                "strain": "strain=NBU2595",
                "accession": "GCA_014925385.1",
                "taxid": 2762760,
                "species_taxid": 2762760,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3894,
                "matched_fragments": 53,
                "total_fragments": 512,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 12.5,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013204265.1",
                "gtdb_species": "s__Casp-alpha2 sp013204265",
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                "matched_fragments": 360,
                "total_fragments": 512,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__Casp-alpha2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016763915.1",
                "gtdb_species": "s__Casp-alpha2 sp016763915",
                "ani": 81.5689,
                "matched_fragments": 201,
                "total_fragments": 512,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__Casp-alpha2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014382345.1",
                "gtdb_species": "s__Casp-alpha2 sp014382345",
                "ani": 80.42,
                "matched_fragments": 320,
                "total_fragments": 512,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__Casp-alpha2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013203955.1",
                "gtdb_species": "s__Casp-alpha2 sp013203955",
                "ani": 77.9148,
                "matched_fragments": 157,
                "total_fragments": 512,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__Casp-alpha2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001510075.1",
                "gtdb_species": "s__Casp-alpha2 sp001510075",
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                "matched_fragments": 128,
                "total_fragments": 512,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__Casp-alpha2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002686255.1",
                "gtdb_species": "s__Casp-alpha2 sp002686255",
                "ani": 77.7041,
                "matched_fragments": 162,
                "total_fragments": 512,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__Casp-alpha2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002938315.1",
                "gtdb_species": "s__Casp-alpha2 sp002938315",
                "ani": 77.6835,
                "matched_fragments": 166,
                "total_fragments": 512,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__Casp-alpha2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "99.24",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodospirillales_A",
        "f__Casp-alpha2",
        "g__Casp-alpha2",
        "s__"
    ],
    "_genome_taxon": [
        "Alphaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodospirillales_A",
        "f__Casp-alpha2",
        "g__Casp-alpha2",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhodospirillales",
        "A",
        "Casp-alpha2",
        "Casp-alpha2",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}