{ "type": "genome", "identifier": "GCA_018673215.1", "organism": "Formosa sp.", "title": "Formosa sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University of Melbourne", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018673215.1", "bioproject": "PRJNA630981", "biosample": "SAMN14914044", "wgs_master": "JABHDE000000000.1", "refseq_category": "na", "taxid": "2018467", "species_taxid": "2018467", "organism_name": "Formosa sp.", "infraspecific_name": "", "isolate": "SI037_bin125", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/02", "asm_name": "ASM1867321v1", "submitter": "The University of Melbourne", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/673/215/GCA_018673215.1_ASM1867321v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-02", "dateModified": "2021-06-02", "datePublished": "2021-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Formosa sp." ], "sample_taxid": [ "2018467" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Vancouver, Saanich Inlet" ], "sample_host_location_id": [], "data_size": "0.554 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.01, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1943201", "Number of Sequences": "78", "Longest Sequences (bp)": "120990", "N50 (bp)": "48944", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.2", "Number of CDSs": "1727", "Average Protein Length": "330.9", "Coding Ratio (%)": "88.2", "Number of rRNAs": "2", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, "species_taxid": 1344585, "relation_to_type": "type", "validated": true, "ani": 76.6158, "matched_fragments": 77, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 76.3251, "matched_fragments": 88, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia algoritergicola", "strain": "strain=APA-1", "accession": "GCA_008086165.1", "taxid": 291187, "species_taxid": 291187, "relation_to_type": "type", "validated": true, "ani": 76.3155, "matched_fragments": 87, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 76.3053, "matched_fragments": 83, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia zhangzhouensis", "strain": "strain=MCCC 1A00726", "accession": "GCA_001005305.1", "taxid": 1620405, "species_taxid": 1620405, "relation_to_type": "type", "validated": true, "ani": 76.3036, "matched_fragments": 57, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 76.2655, "matched_fragments": 91, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter alginicilyticus", "strain": "strain=HZ22", "accession": "GCA_001310225.1", "taxid": 1736674, "species_taxid": 1736674, "relation_to_type": "type", "validated": true, "ani": 76.2502, "matched_fragments": 69, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter salicanalis", "strain": "strain=IC162", "accession": "GCA_007997285.1", "taxid": 291193, "species_taxid": 291193, "relation_to_type": "type", "validated": true, "ani": 76.2343, "matched_fragments": 56, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella epiphytica", "strain": "strain=KCTC 12220", "accession": "GCA_014651315.1", "taxid": 262005, "species_taxid": 262005, "relation_to_type": "type", "validated": true, "ani": 76.2191, "matched_fragments": 68, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella epiphytica", "strain": "strain=CECT 7945", "accession": "GCA_003217215.1", "taxid": 262005, "species_taxid": 262005, "relation_to_type": "type", "validated": true, "ani": 76.2087, "matched_fragments": 67, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.2087, "matched_fragments": 97, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.2048, "matched_fragments": 88, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter flavum", "strain": "strain=3B", "accession": "GCA_002843175.1", "taxid": 1909700, "species_taxid": 1909700, "relation_to_type": "type", "validated": true, "ani": 76.1896, "matched_fragments": 76, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 76.1863, "matched_fragments": 91, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 76.1836, "matched_fragments": 63, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.1523, "matched_fragments": 87, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 76.1437, "matched_fragments": 95, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella marina", "strain": "strain=F6397", "accession": "GCA_015645385.1", "taxid": 2785530, "species_taxid": 2785530, "relation_to_type": "type", "validated": true, "ani": 76.1197, "matched_fragments": 83, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter citreus", "strain": "strain=XJNY", "accession": "GCA_002807055.1", "taxid": 2007307, "species_taxid": 2007307, "relation_to_type": "type", "validated": true, "ani": 76.0813, "matched_fragments": 68, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga eckloniae", "strain": "strain=ECD14", "accession": "GCA_002886045.1", "taxid": 1803846, "species_taxid": 1803846, "relation_to_type": "type", "validated": true, "ani": 76.0506, "matched_fragments": 63, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ouciana", "strain": "strain=ZXX205", "accession": "GCA_009709615.1", "taxid": 2608631, "species_taxid": 2608631, "relation_to_type": "type", "validated": true, "ani": 76.0305, "matched_fragments": 69, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera ponticola", "strain": "strain=MM-14", "accession": "GCA_012931685.1", "taxid": 2042995, "species_taxid": 2042995, "relation_to_type": "type", "validated": true, "ani": 76.0056, "matched_fragments": 74, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia myxarmorum", "strain": "strain=ADA-4", "accession": "GCA_008086205.1", "taxid": 291186, "species_taxid": 291186, "relation_to_type": "type", "validated": true, "ani": 75.914, "matched_fragments": 85, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 75.885, "matched_fragments": 90, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana nanhaiensis", "strain": "strain=FHC16", "accession": "GCA_000943555.1", "taxid": 1382798, "species_taxid": 1382798, "relation_to_type": "type", "validated": true, "ani": 75.8455, "matched_fragments": 69, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella costae", "strain": "strain=Z3138", "accession": "GCA_013403865.1", "taxid": 2697008, "species_taxid": 2697008, "relation_to_type": "type", "validated": true, "ani": 75.7689, "matched_fragments": 76, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter japonicus", "strain": "strain=Bio7-1", "accession": "GCA_010725055.1", "taxid": 1962232, "species_taxid": 1962232, "relation_to_type": "type", "validated": true, "ani": 75.7641, "matched_fragments": 57, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia echini", "strain": "strain=DSM 23925", "accession": "GCA_900115185.1", "taxid": 649333, "species_taxid": 649333, "relation_to_type": "type", "validated": true, "ani": 75.6901, "matched_fragments": 86, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 67.01, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018673215.1", "gtdb_species": "s__Hel1-33-131 sp018673215", "ani": 100.0, "matched_fragments": 603, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018608765.1", "gtdb_species": "s__Hel1-33-131 sp018608765", "ani": 85.6514, "matched_fragments": 469, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001735745.1", "gtdb_species": "s__Hel1-33-131 sp001735745", "ani": 84.4971, "matched_fragments": 504, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018608725.1", "gtdb_species": "s__Hel1-33-131 sp018608725", "ani": 83.3818, "matched_fragments": 413, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018608735.1", "gtdb_species": "s__Hel1-33-131 sp018608735", "ani": 81.3358, "matched_fragments": 310, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905479095.1", "gtdb_species": "s__Hel1-33-131 sp905479095", "ani": 80.1022, "matched_fragments": 372, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905181825.1", "gtdb_species": "s__Hel1-33-131 sp905181825", "ani": 78.6915, "matched_fragments": 222, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "99.01", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018608625.1", "gtdb_species": "s__Hel1-33-131 sp018608625", "ani": 78.3291, "matched_fragments": 247, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.311, "cell_length": 0.123, "doubling_h": null, "growth_tmp": 24.666, "optimum_tmp": 25.0, "optimum_ph": 7.5, "genome_size": 3994485.75, "gc_content": 34.36, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.6, "range_salinity": null, "facultative_respiration": 0.6, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.4, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Hel1-33-131", "s__Hel1-33-131 sp018673215" ], "_genome_taxon": [ "Formosa", "sp.", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Hel1-33-131", "s__Hel1-33-131 sp018673215", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Hel1-33-131", "Hel1-33-131", "sp018673215" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }