{
    "type": "genome",
    "identifier": "GCA_018676235.1",
    "organism": "Desulfobacula sp.",
    "title": "Desulfobacula sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Melbourne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018676235.1",
        "bioproject": "PRJNA630981",
        "biosample": "SAMN14914097",
        "wgs_master": "JABHFF000000000.1",
        "refseq_category": "na",
        "taxid": "2593537",
        "species_taxid": "2593537",
        "organism_name": "Desulfobacula sp.",
        "infraspecific_name": "",
        "isolate": "SI037_bin174",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/02",
        "asm_name": "ASM1867623v1",
        "submitter": "The University of Melbourne",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/676/235/GCA_018676235.1_ASM1867623v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-02",
    "dateModified": "2021-06-02",
    "datePublished": "2021-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfobacula sp."
        ],
        "sample_taxid": [
            "2593537"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Vancouver, Saanich Inlet"
        ],
        "sample_host_location_id": [],
        "data_size": "1.354 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.22,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4786051",
        "Number of Sequences": "149",
        "Longest Sequences (bp)": "249113",
        "N50 (bp)": "80091",
        "Gap Ratio (%)": "0.063205",
        "GCcontent (%)": "40.0",
        "Number of CDSs": "4225",
        "Average Protein Length": "317.3",
        "Coding Ratio (%)": "84.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfobacula phenolica",
                "strain": "strain=DSM 3384",
                "accession": "GCA_900105645.1",
                "taxid": 90732,
                "species_taxid": 90732,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9063,
                "matched_fragments": 431,
                "total_fragments": 1521,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacula toluolica",
                "strain": "strain=Tol2",
                "accession": "GCA_000307105.1",
                "taxid": 28223,
                "species_taxid": 28223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8736,
                "matched_fragments": 435,
                "total_fragments": 1521,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfotignum balticum",
                "strain": "strain=DSM 7044",
                "accession": "GCA_000421285.1",
                "taxid": 115781,
                "species_taxid": 115781,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8476,
                "matched_fragments": 105,
                "total_fragments": 1521,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfospira joergensenii",
                "strain": "strain=DSM 10085",
                "accession": "GCA_000420085.1",
                "taxid": 53329,
                "species_taxid": 53329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7956,
                "matched_fragments": 123,
                "total_fragments": 1521,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfotignum phosphitoxidans",
                "strain": "strain=DSM 13687",
                "accession": "GCA_000350545.1",
                "taxid": 190898,
                "species_taxid": 190898,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7589,
                "matched_fragments": 107,
                "total_fragments": 1521,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacter latus",
                "strain": "strain=AcRS2",
                "accession": "GCA_013389365.1",
                "taxid": 2292,
                "species_taxid": 2292,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0281,
                "matched_fragments": 67,
                "total_fragments": 1521,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfonema limicola",
                "strain": "strain=5ac10",
                "accession": "GCA_017377355.1",
                "taxid": 45656,
                "species_taxid": 45656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4581,
                "matched_fragments": 50,
                "total_fragments": 1521,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.22,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018645325.1",
                "gtdb_species": "s__Desulfobacula sp018645325",
                "ani": 99.7663,
                "matched_fragments": 1287,
                "total_fragments": 1521,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.49",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 13,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018702715.1",
                "gtdb_species": "s__Desulfobacula sp018702715",
                "ani": 84.0097,
                "matched_fragments": 635,
                "total_fragments": 1521,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014383445.1",
                "gtdb_species": "s__Desulfobacula maris",
                "ani": 83.7731,
                "matched_fragments": 838,
                "total_fragments": 1521,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.72",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018812385.1",
                "gtdb_species": "s__Desulfobacula sp018812385",
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                "matched_fragments": 601,
                "total_fragments": 1521,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014237455.1",
                "gtdb_species": "s__Desulfobacula sp014237455",
                "ani": 80.6432,
                "matched_fragments": 575,
                "total_fragments": 1521,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019038815.1",
                "gtdb_species": "s__Desulfobacula sp019038815",
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                "matched_fragments": 425,
                "total_fragments": 1521,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003647385.1",
                "gtdb_species": "s__Desulfobacula sp003647385",
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                "matched_fragments": 351,
                "total_fragments": 1521,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000307105.1",
                "gtdb_species": "s__Desulfobacula toluolica",
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                "matched_fragments": 435,
                "total_fragments": 1521,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.14",
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                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013151635.1",
                "gtdb_species": "s__Desulfobacula sp013151635",
                "ani": 78.8313,
                "matched_fragments": 460,
                "total_fragments": 1521,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.75,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.05,
        "genome_size": 5034625.0,
        "gc_content": 41.4,
        "coding_genes": 4482.333,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobacteria",
        "o__Desulfobacterales",
        "f__Desulfobacteraceae",
        "g__Desulfobacula",
        "s__Desulfobacula sp018645325"
    ],
    "_genome_taxon": [
        "Desulfobacula",
        "sp.",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobacteria",
        "o__Desulfobacterales",
        "f__Desulfobacteraceae",
        "g__Desulfobacula",
        "s__Desulfobacula sp018645325",
        "Bacteria",
        "Desulfobacterota",
        "Desulfobacteria",
        "Desulfobacterales",
        "Desulfobacteraceae",
        "Desulfobacula",
        "Desulfobacula",
        "sp018645325"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}