{
    "type": "genome",
    "identifier": "GCA_018676295.1",
    "organism": "Opitutales bacterium",
    "title": "Opitutales bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Melbourne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018676295.1",
        "bioproject": "PRJNA630981",
        "biosample": "SAMN14914093",
        "wgs_master": "JABHFB000000000.1",
        "refseq_category": "na",
        "taxid": "2026772",
        "species_taxid": "2026772",
        "organism_name": "Opitutales bacterium",
        "infraspecific_name": "",
        "isolate": "SI037_bin170",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/02",
        "asm_name": "ASM1867629v1",
        "submitter": "The University of Melbourne",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/676/295/GCA_018676295.1_ASM1867629v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-02",
    "dateModified": "2021-06-02",
    "datePublished": "2021-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Opitutales bacterium"
        ],
        "sample_taxid": [
            "2026772"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Vancouver, Saanich Inlet"
        ],
        "sample_host_location_id": [],
        "data_size": "0.876 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 68.64,
        "contamination": 0.52,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3013626",
        "Number of Sequences": "731",
        "Longest Sequences (bp)": "18684",
        "N50 (bp)": "4569",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.3",
        "Number of CDSs": "1910",
        "Average Protein Length": "306.4",
        "Coding Ratio (%)": "58.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "22",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 68.64,
            "contamination": 0.52,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018700525.1",
                "gtdb_species": "s__UBA5691 sp018700525",
                "ani": 99.7063,
                "matched_fragments": 579,
                "total_fragments": 587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__UBA5691",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014529625.1",
                "gtdb_species": "s__UBA5691 sp002420265",
                "ani": 77.4229,
                "matched_fragments": 57,
                "total_fragments": 587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__UBA5691",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.17",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.248,
        "cell_length": -0.398,
        "doubling_h": null,
        "growth_tmp": 36.5,
        "optimum_tmp": null,
        "optimum_ph": 7.75,
        "genome_size": 5272321.702,
        "gc_content": 65.092,
        "coding_genes": 4656.944,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 51.333,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.5,
        "anaerobic_respiration": 0.25,
        "aerobic_respiration": 0.25,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Opitutales",
        "f__Opitutaceae",
        "g__Pelagisphaera",
        "s__Pelagisphaera sp018700525"
    ],
    "_genome_taxon": [
        "Opitutales",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Opitutales",
        "f__Opitutaceae",
        "g__Pelagisphaera",
        "s__Pelagisphaera sp018700525",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Opitutales",
        "Opitutaceae",
        "Pelagisphaera",
        "Pelagisphaera",
        "sp018700525"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}