{ "type": "genome", "identifier": "GCA_018677455.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018677455.1", "bioproject": "PRJNA623061", "biosample": "SAMN19247017", "wgs_master": "JAHHPC000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "IDS-50", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/02", "asm_name": "ASM1867745v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/677/455/GCA_018677455.1_ASM1867745v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-02", "dateModified": "2021-06-02", "datePublished": "2021-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Port Phillip Bay" ], "sample_host_location_id": [], "data_size": "0.911 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3208883", "Number of Sequences": "168", "Longest Sequences (bp)": "96736", "N50 (bp)": "34782", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.6", "Number of CDSs": "2721", "Average Protein Length": "340.9", "Coding Ratio (%)": "86.7", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoxanthomonas taiwanensis", "strain": "strain=DSM 22914", "accession": "GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 76.7921, "matched_fragments": 85, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiae", "strain": "strain=119BY6-57", "accession": "GCA_014145325.1", "taxid": 2025720, "species_taxid": 2025720, "relation_to_type": "type", "validated": true, "ani": 76.5603, "matched_fragments": 82, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 76.5481, "matched_fragments": 87, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 76.5191, "matched_fragments": 88, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter spathiphylli", "strain": "strain=B39", "accession": "GCA_000264295.1", "taxid": 347483, "species_taxid": 347483, "relation_to_type": "type", "validated": true, "ani": 76.5131, "matched_fragments": 70, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas suwonensis", "strain": "strain=DSM 17175", "accession": "GCA_010093235.1", "taxid": 314722, "species_taxid": 314722, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3347, "matched_fragments": 91, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 76.2971, "matched_fragments": 98, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 76.2893, "matched_fragments": 104, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=RLD-1", "accession": "GCA_900187975.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 76.2444, "matched_fragments": 79, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudofulvimonas gallinarii", "strain": "strain=DSM 21944", "accession": "GCA_004798975.1", "taxid": 634155, "species_taxid": 634155, "relation_to_type": "type", "validated": true, "ani": 76.2327, "matched_fragments": 72, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=CCM 7361", "accession": "GCA_900099945.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 76.2208, "matched_fragments": 80, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudofulvimonas gallinarii", "strain": "strain=DSM 21944", "accession": "GCA_004343305.1", "taxid": 634155, "species_taxid": 634155, "relation_to_type": "type", "validated": true, "ani": 76.217, "matched_fragments": 74, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleiagrimonas soli", "strain": "strain=3.5X", "accession": "GCA_000761445.1", "taxid": 1543381, "species_taxid": 1543381, "relation_to_type": "type", "validated": true, "ani": 76.2092, "matched_fragments": 87, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleiagrimonas soli", "strain": "strain=DSM 107085", "accession": "GCA_014201555.1", "taxid": 1543381, "species_taxid": 1543381, "relation_to_type": "type", "validated": true, "ani": 76.1828, "matched_fragments": 90, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter niastensis", "strain": "strain=DSM 18481", "accession": "GCA_015453285.1", "taxid": 380629, "species_taxid": 380629, "relation_to_type": "type", "validated": true, "ani": 76.1822, "matched_fragments": 79, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella amyloliquefaciens", "strain": "strain=DHC06", "accession": "GCA_004296575.1", "taxid": 1770545, "species_taxid": 1770545, "relation_to_type": "type", "validated": true, "ani": 76.1805, "matched_fragments": 68, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter yeojuensis", "strain": "strain=DSM 17673", "accession": "GCA_011742875.1", "taxid": 345309, "species_taxid": 345309, "relation_to_type": "type", "validated": true, "ani": 76.1556, "matched_fragments": 66, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella solisilvae", "strain": "strain=DHG54", "accession": "GCA_003351225.1", "taxid": 1920168, "species_taxid": 1920168, "relation_to_type": "type", "validated": true, "ani": 76.1064, "matched_fragments": 77, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=TR7-09", "accession": "GCA_000747175.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 76.0864, "matched_fragments": 86, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 76.0306, "matched_fragments": 92, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 76.0233, "matched_fragments": 62, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 75.9401, "matched_fragments": 89, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter anthropi", "strain": "strain=CCUG 25036", "accession": "GCA_011759365.1", "taxid": 564369, "species_taxid": 564369, "relation_to_type": "type", "validated": true, "ani": 75.9085, "matched_fragments": 60, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rudaea cellulosilytica", "strain": "strain=DSM 22992", "accession": "GCA_000378125.1", "taxid": 540746, "species_taxid": 540746, "relation_to_type": "type", "validated": true, "ani": 75.8609, "matched_fragments": 63, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 75.8488, "matched_fragments": 68, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella kyungheensis", "strain": "strain=THG-B117", "accession": "GCA_016905005.1", "taxid": 1242174, "species_taxid": 1242174, "relation_to_type": "type", "validated": true, "ani": 75.843, "matched_fragments": 87, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 75.6288, "matched_fragments": 64, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas entomophila", "strain": "strain=L48", "accession": "GCA_000026105.1", "taxid": 312306, "species_taxid": 312306, "relation_to_type": "suspected-type", "validated": true, "ani": 75.4591, "matched_fragments": 53, "total_fragments": 989, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013042915.1", "gtdb_species": "s__JABDPF01 sp013042915", "ani": 99.6629, "matched_fragments": 785, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__JABDPF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.57", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_013001885.1", "gtdb_species": "s__JABDPF01 sp013001885", "ani": 77.4424, "matched_fragments": 196, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__JABDPF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.83", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_008725655.1", "gtdb_species": "s__W260 sp008725655", "ani": 77.1568, "matched_fragments": 177, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__W260", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009295635.1", "gtdb_species": "s__S0819 sp009295635", "ani": 76.6075, "matched_fragments": 55, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__AK92;g__S0819", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014145325.1", "gtdb_species": "s__Lysobacter spongiae", "ani": 76.5862, "matched_fragments": 81, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008033445.1", "gtdb_species": "s__Vulcaniibacterium_B gelatinicum", "ani": 76.5644, "matched_fragments": 86, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Vulcaniibacterium_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011773845.1", "gtdb_species": "s__WVWV01 sp011773845", "ani": 76.5541, "matched_fragments": 132, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__WVWV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000953855.2", "gtdb_species": "s__Mizugakiibacter sediminis", "ani": 76.4469, "matched_fragments": 105, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Mizugakiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000263395.1", "gtdb_species": "s__Pseudomonas_A stutzeri_C", "ani": 76.0689, "matched_fragments": 55, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018122625.2", "gtdb_species": "s__Coralloluteibacterium stylophorae", "ani": 76.0579, "matched_fragments": 85, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Coralloluteibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007135935.1", "gtdb_species": "s__Wenzhouxiangella sp007135935", "ani": 76.0384, "matched_fragments": 58, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Wenzhouxiangellaceae;g__Wenzhouxiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004341245.1", "gtdb_species": "s__Plasticicumulans_A lactativorans", "ani": 76.0306, "matched_fragments": 92, "total_fragments": 989, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Plasticicumulans_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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