{
    "type": "genome",
    "identifier": "GCA_018677615.1",
    "organism": "Gammaproteobacteria bacterium",
    "title": "Gammaproteobacteria bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Monash University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018677615.1",
        "bioproject": "PRJNA623061",
        "biosample": "SAMN19247016",
        "wgs_master": "JAHHPB000000000.1",
        "refseq_category": "na",
        "taxid": "1913989",
        "species_taxid": "1913989",
        "organism_name": "Gammaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "IDS-24",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/02",
        "asm_name": "ASM1867761v1",
        "submitter": "Monash University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/677/615/GCA_018677615.1_ASM1867761v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-02",
    "dateModified": "2021-06-02",
    "datePublished": "2021-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gammaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "1913989"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia: Port Phillip Bay"
        ],
        "sample_host_location_id": [],
        "data_size": "0.846 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 84.0,
        "contamination": 4.63,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3009327",
        "Number of Sequences": "673",
        "Longest Sequences (bp)": "35086",
        "N50 (bp)": "4871",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.8",
        "Number of CDSs": "2134",
        "Average Protein Length": "310.7",
        "Coding Ratio (%)": "66.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Arenimonas metalli",
                "strain": "strain=CF5-1",
                "accession": "GCA_000747155.1",
                "taxid": 948077,
                "species_taxid": 948077,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6371,
                "matched_fragments": 80,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella solisilvae",
                "strain": "strain=DHG54",
                "accession": "GCA_003351225.1",
                "taxid": 1920168,
                "species_taxid": 1920168,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5643,
                "matched_fragments": 60,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Wenzhouxiangella marina",
                "strain": "strain=KCTC 42284",
                "accession": "GCA_001187785.1",
                "taxid": 1579979,
                "species_taxid": 1579979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4965,
                "matched_fragments": 74,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas marina",
                "strain": "strain=FR1330",
                "accession": "GCA_007859325.1",
                "taxid": 488485,
                "species_taxid": 488485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4517,
                "matched_fragments": 91,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter arseniciresistens",
                "strain": "strain=ZS79",
                "accession": "GCA_000768335.1",
                "taxid": 1385522,
                "species_taxid": 1385522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4344,
                "matched_fragments": 72,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas caeni",
                "strain": "strain=z29",
                "accession": "GCA_003024235.1",
                "taxid": 2058085,
                "species_taxid": 2058085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4109,
                "matched_fragments": 101,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Wenzhouxiangella marina",
                "strain": "strain=DSM 103414",
                "accession": "GCA_014203035.1",
                "taxid": 1579979,
                "species_taxid": 1579979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.373,
                "matched_fragments": 76,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalbus denitrificans",
                "strain": "strain=DSM 26407",
                "accession": "GCA_003337735.1",
                "taxid": 547122,
                "species_taxid": 547122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3644,
                "matched_fragments": 78,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcaniibacterium thermophilum",
                "strain": "strain=KCTC 32020",
                "accession": "GCA_007923255.1",
                "taxid": 1169913,
                "species_taxid": 1169913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3576,
                "matched_fragments": 99,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella amyloliquefaciens",
                "strain": "strain=DHC06",
                "accession": "GCA_004296575.1",
                "taxid": 1770545,
                "species_taxid": 1770545,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3003,
                "matched_fragments": 53,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio sulfidiphilus",
                "strain": "strain=HL-EbGR7",
                "accession": "GCA_000021985.1",
                "taxid": 1033854,
                "species_taxid": 1033854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1078,
                "matched_fragments": 60,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Wenzhouxiangella sediminis",
                "strain": "strain=XDB06",
                "accession": "GCA_003410055.1",
                "taxid": 1792836,
                "species_taxid": 1792836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0426,
                "matched_fragments": 86,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodanobacter fulvus",
                "strain": "strain=Jip2",
                "accession": "GCA_000264315.1",
                "taxid": 219571,
                "species_taxid": 219571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.007,
                "matched_fragments": 63,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella telluris",
                "strain": "strain=G9",
                "accession": "GCA_014297575.1",
                "taxid": 2763498,
                "species_taxid": 2763498,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8615,
                "matched_fragments": 59,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Steroidobacter agaridevorans",
                "strain": "strain=SA29-B",
                "accession": "GCA_009932555.1",
                "taxid": 2695856,
                "species_taxid": 2695856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8143,
                "matched_fragments": 50,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=DSM 50238",
                "accession": "GCA_024448505.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7031,
                "matched_fragments": 56,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=FDAARGOS_876",
                "accession": "GCA_016028635.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.6795,
                "matched_fragments": 58,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=DSM 50071",
                "accession": "GCA_024169805.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3991,
                "matched_fragments": 73,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=JCM 5962",
                "accession": "GCA_022496575.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3843,
                "matched_fragments": 74,
                "total_fragments": 628,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 84.0,
            "contamination": 4.63,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013042915.1",
                "gtdb_species": "s__JABDPF01 sp013042915",
                "ani": 77.8473,
                "matched_fragments": 190,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__JABDPF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.57",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_013001885.1",
                "gtdb_species": "s__JABDPF01 sp013001885",
                "ani": 77.7334,
                "matched_fragments": 168,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__JABDPF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.83",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_008725655.1",
                "gtdb_species": "s__W260 sp008725655",
                "ani": 77.5322,
                "matched_fragments": 152,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__W260",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011524975.1",
                "gtdb_species": "s__WTJD01 sp011524975",
                "ani": 76.8099,
                "matched_fragments": 74,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__SZUA-36;g__WTJD01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007121485.1",
                "gtdb_species": "s__Wenzhouxiangella sp007121485",
                "ani": 76.7389,
                "matched_fragments": 51,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Wenzhouxiangellaceae;g__Wenzhouxiangella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000953855.2",
                "gtdb_species": "s__Mizugakiibacter sediminis",
                "ani": 76.7336,
                "matched_fragments": 111,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Mizugakiibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002279065.1",
                "gtdb_species": "s__Dyella_A sp002279065",
                "ani": 76.6044,
                "matched_fragments": 81,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017305135.1",
                "gtdb_species": "s__Dokdonella_A sp017305135",
                "ani": 76.4898,
                "matched_fragments": 72,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007923255.1",
                "gtdb_species": "s__Lysobacter thermophilus",
                "ani": 76.3576,
                "matched_fragments": 99,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004745945.1",
                "gtdb_species": "s__Halioglobus sp004745945",
                "ani": 76.2449,
                "matched_fragments": 54,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002344355.1",
                "gtdb_species": "s__Pseudofulvimonas sp002344355",
                "ani": 76.2343,
                "matched_fragments": 92,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__UBA2363;g__Pseudofulvimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_011058255.1",
                "gtdb_species": "s__XN24 sp011058255",
                "ani": 76.2278,
                "matched_fragments": 82,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__XN24;f__XN24;g__XN24",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004299705.1",
                "gtdb_species": "s__66-474 sp004299705",
                "ani": 76.1748,
                "matched_fragments": 62,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__66-474",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018240295.1",
                "gtdb_species": "s__Plasticicumulans sp003962905",
                "ani": 76.144,
                "matched_fragments": 83,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Plasticicumulans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.50",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000021985.1",
                "gtdb_species": "s__Thioalkalivibrio_A sulfidiphilus",
                "ani": 76.1325,
                "matched_fragments": 59,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Thioalkalivibrio_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002001165.1",
                "gtdb_species": "s__Rhodanobacter sp002001165",
                "ani": 76.132,
                "matched_fragments": 51,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rhodanobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000264315.1",
                "gtdb_species": "s__Rhodanobacter fulvus",
                "ani": 76.007,
                "matched_fragments": 63,
                "total_fragments": 628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rhodanobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Xanthomonadales",
        "f__SZUA-36",
        "g__CAMYKC01",
        "s__"
    ],
    "_genome_taxon": [
        "Gammaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Xanthomonadales",
        "f__SZUA-36",
        "g__CAMYKC01",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Xanthomonadales",
        "SZUA-36",
        "CAMYKC01",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000192",
            "label": "beach sand"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}