{ "type": "genome", "identifier": "GCA_018679845.1", "organism": "Christiangramia sp.", "title": "Christiangramia sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018679845.1", "bioproject": "PRJNA623061", "biosample": "SAMN19246889", "wgs_master": "JAHHKE000000000.1", "refseq_category": "na", "taxid": "1931228", "species_taxid": "1931228", "organism_name": "Christiangramia sp.", "infraspecific_name": "", "isolate": "HDS-14", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/02", "asm_name": "ASM1867984v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/679/845/GCA_018679845.1_ASM1867984v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-02", "dateModified": "2021-06-02", "datePublished": "2021-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Christiangramia sp." ], "sample_taxid": [ "1931228" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Port Phillip Bay" ], "sample_host_location_id": [], "data_size": "0.399 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 54.17, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1379023", "Number of Sequences": "426", "Longest Sequences (bp)": "11898", "N50 (bp)": "3364", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.8", "Number of CDSs": "911", "Average Protein Length": "275.4", "Coding Ratio (%)": "54.6", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gramella echinicola", "strain": "strain=DSM 19838", "accession": "GCA_000423065.1", "taxid": 279359, "species_taxid": 279359, "relation_to_type": "type", "validated": true, "ani": 81.4348, "matched_fragments": 154, "total_fragments": 203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella sabulilitoris", "strain": "strain=HSMS-1", "accession": "GCA_007050985.1", "taxid": 2583991, "species_taxid": 2583991, "relation_to_type": "type", "validated": true, "ani": 81.341, "matched_fragments": 145, "total_fragments": 203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella gaetbulicola", "strain": "strain=DSM 23082", "accession": "GCA_003054225.1", "taxid": 703340, "species_taxid": 703340, "relation_to_type": "type", "validated": true, "ani": 80.8593, "matched_fragments": 146, "total_fragments": 203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella aestuarii", "strain": "strain=BS12", "accession": "GCA_009735585.1", "taxid": 1028746, "species_taxid": 1028746, "relation_to_type": "type", "validated": true, "ani": 80.0622, "matched_fragments": 126, "total_fragments": 203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella forsetii", "strain": "strain=KT0803", "accession": "GCA_000060345.1", "taxid": 411153, "species_taxid": 411153, "relation_to_type": "type", "validated": true, "ani": 79.7765, "matched_fragments": 124, "total_fragments": 203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella forsetii", "strain": "strain=CGMCC 1.15422", "accession": "GCA_014642775.1", "taxid": 411153, "species_taxid": 411153, "relation_to_type": "type", "validated": true, "ani": 79.7554, "matched_fragments": 124, "total_fragments": 203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella crocea", "strain": "strain=YB25", "accession": "GCA_022410465.1", "taxid": 2904124, "species_taxid": 2904124, "relation_to_type": "type", "validated": true, "ani": 78.7079, "matched_fragments": 100, "total_fragments": 203, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 54.17, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000423065.1", "gtdb_species": "s__Gramella echinicola", "ani": 81.4348, "matched_fragments": 154, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007050985.1", "gtdb_species": "s__Gramella sabulilitoris", "ani": 81.341, "matched_fragments": 145, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003054225.1", "gtdb_species": "s__Gramella gaetbulicola", "ani": 80.8593, "matched_fragments": 146, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009735585.1", "gtdb_species": "s__Gramella aestuarii", "ani": 80.0622, "matched_fragments": 126, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105135.1", "gtdb_species": "s__Gramella sp900105135", "ani": 79.9493, "matched_fragments": 122, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000060345.1", "gtdb_species": "s__Gramella forsetii", "ani": 79.7765, "matched_fragments": 124, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001889005.1", "gtdb_species": "s__Gramella salexigens", "ani": 78.7861, "matched_fragments": 98, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Gramella", "s__" ], "_genome_taxon": [ "Christiangramia", "sp.", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Gramella", "s__", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Gramella", "s", "", "" ], "_meo": [ { "id": "MEO_0000192", "label": "beach sand" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }