{ "type": "genome", "identifier": "GCA_018693355.1", "organism": "Candidatus Poribacteria bacterium", "title": "Candidatus Poribacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Melbourne", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018693355.1", "bioproject": "PRJNA630981", "biosample": "SAMN14914267", "wgs_master": "JABHLT000000000.1", "refseq_category": "na", "taxid": "2026781", "species_taxid": "2026781", "organism_name": "Candidatus Poribacteria bacterium", "infraspecific_name": "", "isolate": "SI037S2_bin50", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/02", "asm_name": "ASM1869335v1", "submitter": "The University of Melbourne", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/693/355/GCA_018693355.1_ASM1869335v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-02", "dateModified": "2021-06-02", "datePublished": "2021-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Poribacteria bacterium" ], "sample_taxid": [ "2026781" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Vancouver, Saanich Inlet" ], "sample_host_location_id": [], "data_size": "1.902 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 88.74, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6810090", "Number of Sequences": "1079", "Longest Sequences (bp)": "37019", "N50 (bp)": "7987", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "4728", "Average Protein Length": "322.8", "Coding Ratio (%)": "67.2", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Agromyces protaetiae", "strain": "strain=FW100M-8", "accession": "GCA_004135405.1", "taxid": 2509455, "species_taxid": 2509455, "relation_to_type": "type", "validated": true, "ani": 74.6847, "matched_fragments": 77, "total_fragments": 1701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum soli", "strain": "strain=CC-LY788", "accession": "GCA_017876165.1", "taxid": 1304799, "species_taxid": 1304799, "relation_to_type": "type", "validated": true, "ani": 74.6627, "matched_fragments": 52, "total_fragments": 1701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus metalli", "strain": "strain=DSM 27521", "accession": "GCA_014201805.1", "taxid": 1141878, "species_taxid": 1141878, "relation_to_type": "type", "validated": true, "ani": 74.6386, "matched_fragments": 55, "total_fragments": 1701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium arenosum", "strain": "strain=KCTC 49039", "accession": "GCA_014837295.1", "taxid": 2708133, "species_taxid": 2708133, "relation_to_type": "type", "validated": true, "ani": 74.6124, "matched_fragments": 63, "total_fragments": 1701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 74.6092, "matched_fragments": 61, "total_fragments": 1701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 74.5927, "matched_fragments": 52, "total_fragments": 1701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halogeometricum rufum", "strain": "strain=CGMCC 1.7736", "accession": "GCA_900112175.1", "taxid": 553469, "species_taxid": 553469, "relation_to_type": "type", "validated": true, "ani": 74.5914, "matched_fragments": 51, "total_fragments": 1701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix carnea", "strain": "strain=CGMCC 4.7097", "accession": "GCA_003014735.1", "taxid": 1280637, "species_taxid": 1280637, "relation_to_type": "type", "validated": true, "ani": 74.5141, "matched_fragments": 71, "total_fragments": 1701, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 88.74, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018644665.1", "gtdb_species": "s__GCA-2687025 sp018644665", "ani": 99.9026, "matched_fragments": 1639, "total_fragments": 1701, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__GCA-2687025;f__GCA-2687025;g__GCA-2687025", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_002687025.1", "gtdb_species": "s__GCA-2687025 sp002687025", "ani": 83.7222, "matched_fragments": 937, "total_fragments": 1701, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__GCA-2687025;f__GCA-2687025;g__GCA-2687025", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016866785.1", "gtdb_species": "s__VGLH01 sp016866785", "ani": 75.8506, "matched_fragments": 163, "total_fragments": 1701, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__GCA-2687025;f__GCA-2687025;g__VGLH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004135405.1", "gtdb_species": "s__Agromyces protaetiae", "ani": 74.6847, "matched_fragments": 77, "total_fragments": 1701, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003014735.1", "gtdb_species": "s__Actinosynnema carneum", "ani": 74.512, "matched_fragments": 72, "total_fragments": 1701, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.10", "min_intra_species_ani": "95.10", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Poribacteria", "c__WGA-4E", "o__GCA-2687025", "f__GCA-2687025", "g__GCA-2687025", "s__GCA-2687025 sp018644665" ], "_genome_taxon": [ "Candidatus", "Poribacteria", "bacterium", "d__Bacteria", "p__Poribacteria", "c__WGA-4E", "o__GCA-2687025", "f__GCA-2687025", "g__GCA-2687025", "s__GCA-2687025 sp018644665", "Bacteria", "Poribacteria", "WGA-4E", "GCA-2687025", "GCA-2687025", "GCA-2687025", "GCA-2687025", "sp018644665" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }