{
    "type": "genome",
    "identifier": "GCA_018698115.1",
    "organism": "Nitrososphaerota archaeon",
    "title": "Nitrososphaerota archaeon",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Melbourne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018698115.1",
        "bioproject": "PRJNA630981",
        "biosample": "SAMN14915027",
        "wgs_master": "JABINX000000000.1",
        "refseq_category": "na",
        "taxid": "2026795",
        "species_taxid": "2026795",
        "organism_name": "Nitrososphaerota archaeon",
        "infraspecific_name": "",
        "isolate": "SI060_bin55",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/02",
        "asm_name": "ASM1869811v1",
        "submitter": "The University of Melbourne",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/698/115/GCA_018698115.1_ASM1869811v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-02",
    "dateModified": "2021-06-02",
    "datePublished": "2021-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrososphaerota archaeon"
        ],
        "sample_taxid": [
            "2026795"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Vancouver, Saanich Inlet"
        ],
        "sample_host_location_id": [],
        "data_size": "0.298 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 86.74,
        "contamination": 4.55,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1071269",
        "Number of Sequences": "87",
        "Longest Sequences (bp)": "88343",
        "N50 (bp)": "19646",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.9",
        "Number of CDSs": "1208",
        "Average Protein Length": "251.8",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrosopumilus oxyclinae",
                "strain": "strain=HCE1",
                "accession": "GCA_013407165.1",
                "taxid": 1959104,
                "species_taxid": 1959104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4085,
                "matched_fragments": 98,
                "total_fragments": 314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus piranensis",
                "strain": "strain=D3C",
                "accession": "GCA_000875775.1",
                "taxid": 1582439,
                "species_taxid": 1582439,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9868,
                "matched_fragments": 82,
                "total_fragments": 314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus adriaticus",
                "strain": "strain=NF5",
                "accession": "GCA_000956175.1",
                "taxid": 1580092,
                "species_taxid": 1580092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9306,
                "matched_fragments": 85,
                "total_fragments": 314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus ureiphilus",
                "strain": "strain=PS0",
                "accession": "GCA_013407185.1",
                "taxid": 1470067,
                "species_taxid": 1470067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8312,
                "matched_fragments": 80,
                "total_fragments": 314,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 86.74,
            "contamination": 4.55,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018647405.1",
                "gtdb_species": "s__Nitrosopelagicus sp018647405",
                "ani": 99.267,
                "matched_fragments": 261,
                "total_fragments": 314,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopelagicus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "99.17",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 12,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001510295.1",
                "gtdb_species": "s__Nitrosopelagicus sp001510295",
                "ani": 90.1591,
                "matched_fragments": 163,
                "total_fragments": 314,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopelagicus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000812185.1",
                "gtdb_species": "s__Nitrosopelagicus brevis",
                "ani": 87.5015,
                "matched_fragments": 283,
                "total_fragments": 314,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopelagicus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.23",
                "min_intra_species_ani": "96.14",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_902511735.1",
                "gtdb_species": "s__Nitrosopelagicus sp902511735",
                "ani": 87.5001,
                "matched_fragments": 164,
                "total_fragments": 314,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopelagicus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902512865.1",
                "gtdb_species": "s__Nitrosopelagicus sp902512865",
                "ani": 87.4507,
                "matched_fragments": 135,
                "total_fragments": 314,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopelagicus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrosopumilaceae",
        "g__Nitrosopelagicus",
        "s__Nitrosopelagicus sp018647405"
    ],
    "_genome_taxon": [
        "Nitrososphaerota",
        "archaeon",
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrosopumilaceae",
        "g__Nitrosopelagicus",
        "s__Nitrosopelagicus sp018647405",
        "Archaea",
        "Thermoproteota",
        "Nitrososphaeria",
        "Nitrososphaerales",
        "Nitrosopumilaceae",
        "Nitrosopelagicus",
        "Nitrosopelagicus",
        "sp018647405"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}