{
    "type": "genome",
    "identifier": "GCA_018698245.1",
    "organism": "Thiotrichales bacterium",
    "title": "Thiotrichales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Melbourne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018698245.1",
        "bioproject": "PRJNA630981",
        "biosample": "SAMN14915035",
        "wgs_master": "JABIOF000000000.1",
        "refseq_category": "na",
        "taxid": "2026796",
        "species_taxid": "2026796",
        "organism_name": "Thiotrichales bacterium",
        "infraspecific_name": "",
        "isolate": "SI060_bin62",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/02",
        "asm_name": "ASM1869824v1",
        "submitter": "The University of Melbourne",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/698/245/GCA_018698245.1_ASM1869824v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-02",
    "dateModified": "2021-06-02",
    "datePublished": "2021-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thiotrichales bacterium"
        ],
        "sample_taxid": [
            "2026796"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Vancouver, Saanich Inlet"
        ],
        "sample_host_location_id": [],
        "data_size": "0.367 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 81.3,
        "contamination": 10.89,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1281820",
        "Number of Sequences": "215",
        "Longest Sequences (bp)": "42845",
        "N50 (bp)": "7518",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.6",
        "Number of CDSs": "1079",
        "Average Protein Length": "306.9",
        "Coding Ratio (%)": "77.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Candidatus Pseudothioglobus singularis",
                "strain": "strain=PS1",
                "accession": "GCA_001281385.1",
                "taxid": 1427364,
                "species_taxid": 1427364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1746,
                "matched_fragments": 260,
                "total_fragments": 311,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 81.3,
            "contamination": 10.89,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002711905.1",
                "gtdb_species": "s__Pseudothioglobus sp002711905",
                "ani": 97.4057,
                "matched_fragments": 176,
                "total_fragments": 311,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.25",
                "min_intra_species_ani": "97.13",
                "mean_intra_species_af": "0.60",
                "min_intra_species_af": "0.55",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902513495.1",
                "gtdb_species": "s__Pseudothioglobus sp902513495",
                "ani": 86.2122,
                "matched_fragments": 169,
                "total_fragments": 311,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.65",
                "min_intra_species_ani": "97.05",
                "mean_intra_species_af": "0.53",
                "min_intra_species_af": "0.51",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001281385.1",
                "gtdb_species": "s__Pseudothioglobus singularis",
                "ani": 85.2073,
                "matched_fragments": 259,
                "total_fragments": 311,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.68",
                "min_intra_species_ani": "95.87",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_902512305.1",
                "gtdb_species": "s__Pseudothioglobus sp902512305",
                "ani": 80.4186,
                "matched_fragments": 188,
                "total_fragments": 311,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.03",
                "min_intra_species_ani": "95.27",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_902556205.1",
                "gtdb_species": "s__Pseudothioglobus sp002169705",
                "ani": 79.9428,
                "matched_fragments": 158,
                "total_fragments": 311,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.58",
                "min_intra_species_ani": "95.16",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_902511025.1",
                "gtdb_species": "s__Pseudothioglobus sp902511025",
                "ani": 79.6928,
                "matched_fragments": 91,
                "total_fragments": 311,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902509905.1",
                "gtdb_species": "s__Pseudothioglobus sp902509905",
                "ani": 79.4133,
                "matched_fragments": 164,
                "total_fragments": 311,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.83",
                "min_intra_species_ani": "95.81",
                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_001628405.1",
                "gtdb_species": "s__Pseudothioglobus sp001628405",
                "ani": 79.0729,
                "matched_fragments": 185,
                "total_fragments": 311,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.86",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.08,
        "cell_length": 0.34,
        "doubling_h": 0.159,
        "growth_tmp": 27.967,
        "optimum_tmp": 28.032,
        "optimum_ph": 7.527,
        "genome_size": 3086759.458,
        "gc_content": 40.345,
        "coding_genes": 2281.4,
        "rRNA16S_genes": 2.881,
        "tRNA_genes": 42.007,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.571,
        "range_salinity": 0.8,
        "facultative_respiration": 0.066,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.933,
        "mesophilic_range_tmp": 0.888,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.111,
        "bacillus_cell_shape": 0.703,
        "coccus_cell_shape": 0.148,
        "filament_cell_shape": 0.037,
        "coccobacillus_cell_shape": 0.074,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.037
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__PS1",
        "f__Thioglobaceae",
        "g__Pseudothioglobus",
        "s__Pseudothioglobus sp002711905"
    ],
    "_genome_taxon": [
        "Thiotrichales",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__PS1",
        "f__Thioglobaceae",
        "g__Pseudothioglobus",
        "s__Pseudothioglobus sp002711905",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "PS1",
        "Thioglobaceae",
        "Pseudothioglobus",
        "Pseudothioglobus",
        "sp002711905"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}