{
    "type": "genome",
    "identifier": "GCA_018701295.1",
    "organism": "Candidatus Thioglobus sp.",
    "title": "Candidatus Thioglobus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Melbourne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018701295.1",
        "bioproject": "PRJNA630981",
        "biosample": "SAMN14915252",
        "wgs_master": "JABIWO000000000.1",
        "refseq_category": "na",
        "taxid": "2026721",
        "species_taxid": "2026721",
        "organism_name": "Candidatus Thioglobus sp.",
        "infraspecific_name": "",
        "isolate": "SI072_bin97",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/02",
        "asm_name": "ASM1870129v1",
        "submitter": "The University of Melbourne",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/701/295/GCA_018701295.1_ASM1870129v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-02",
    "dateModified": "2021-06-02",
    "datePublished": "2021-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Thioglobus sp."
        ],
        "sample_taxid": [
            "2026721"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Vancouver, Saanich Inlet"
        ],
        "sample_host_location_id": [],
        "data_size": "0.325 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 71.88,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1131263",
        "Number of Sequences": "164",
        "Longest Sequences (bp)": "36134",
        "N50 (bp)": "9122",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.6",
        "Number of CDSs": "1057",
        "Average Protein Length": "276.0",
        "Coding Ratio (%)": "77.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "21",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Candidatus Thioglobus autotrophicus",
                "strain": "strain=EF1",
                "accession": "GCA_001293165.1",
                "taxid": 1705394,
                "species_taxid": 1705394,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7406,
                "matched_fragments": 229,
                "total_fragments": 289,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 71.88,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018644675.1",
                "gtdb_species": "s__Thioglobus sp018644675",
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                "matched_fragments": 273,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001293165.1",
                "gtdb_species": "s__Thioglobus autotrophicus",
                "ani": 82.7406,
                "matched_fragments": 229,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900180385.1",
                "gtdb_species": "s__Thioglobus sp900180385",
                "ani": 79.7853,
                "matched_fragments": 169,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014384345.1",
                "gtdb_species": "s__Thioglobus pontius",
                "ani": 79.386,
                "matched_fragments": 186,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900128515.1",
                "gtdb_species": "s__Thioglobus sp900128515",
                "ani": 79.1755,
                "matched_fragments": 167,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.64",
                "min_intra_species_ani": "99.26",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_012963715.1",
                "gtdb_species": "s__Thioglobus sp012963715",
                "ani": 78.9263,
                "matched_fragments": 139,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_002909145.1",
                "gtdb_species": "s__Thioglobus_B perditus",
                "ani": 78.5208,
                "matched_fragments": 117,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016845205.1",
                "gtdb_species": "s__UBA2013 sp016845205",
                "ani": 78.2037,
                "matched_fragments": 106,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__UBA2013",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018648985.1",
                "gtdb_species": "s__UBA2013 sp018648985",
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                "matched_fragments": 103,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__UBA2013",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003978185.1",
                "gtdb_species": "s__UBA2013 sp003978185",
                "ani": 77.076,
                "matched_fragments": 57,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__UBA2013",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900128405.1",
                "gtdb_species": "s__Thiodubiliella sp900128405",
                "ani": 76.6197,
                "matched_fragments": 64,
                "total_fragments": 289,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thiodubiliella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.90",
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                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 38,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__PS1",
        "f__Thioglobaceae",
        "g__Thioglobus_A",
        "s__Thioglobus_A sp018644675"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Thioglobus",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__PS1",
        "f__Thioglobaceae",
        "g__Thioglobus_A",
        "s__Thioglobus_A sp018644675",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "PS1",
        "Thioglobaceae",
        "Thioglobus",
        "A",
        "Thioglobus",
        "A",
        "sp018644675"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}