{
    "type": "genome",
    "identifier": "GCA_018712435.1",
    "organism": "Candidatus Caccousia avicola",
    "title": "Candidatus Caccousia avicola",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Quadram Institutte",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018712435.1",
        "bioproject": "PRJNA543206",
        "biosample": "SAMN15817070",
        "wgs_master": "DVGZ00000000.1",
        "refseq_category": "na",
        "taxid": "2840721",
        "species_taxid": "2840721",
        "organism_name": "Candidatus Caccousia avicola",
        "infraspecific_name": "",
        "isolate": "ChiSxjej1B13-7958",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/04",
        "asm_name": "ASM1871243v1",
        "submitter": "Quadram Institutte",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/712/435/GCA_018712435.1_ASM1871243v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-04",
    "dateModified": "2021-06-04",
    "datePublished": "2021-06-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Caccousia avicola"
        ],
        "sample_taxid": [
            "2840721"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.707 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2486925",
        "Number of Sequences": "131",
        "Longest Sequences (bp)": "117266",
        "N50 (bp)": "31531",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.6",
        "Number of CDSs": "2249",
        "Average Protein Length": "316.0",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Anaeromassilibacillus senegalensis",
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                "accession": "GCA_001261775.1",
                "taxid": 1673717,
                "species_taxid": 1673717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0166,
                "matched_fragments": 114,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogeniiclostridium mannosilyticum",
                "strain": "strain=ASD2818",
                "accession": "GCA_003268275.1",
                "taxid": 2764322,
                "species_taxid": 2764322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3183,
                "matched_fragments": 93,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Angelakisella massiliensis",
                "strain": "strain=Marseille-P3217",
                "accession": "GCA_900104675.1",
                "taxid": 1871018,
                "species_taxid": 1871018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9059,
                "matched_fragments": 51,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium jeddahense",
                "strain": "strain=JCD",
                "accession": "GCA_000577335.1",
                "taxid": 1414721,
                "species_taxid": 1414721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8692,
                "matched_fragments": 72,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caproicibacter fermentans",
                "strain": "strain=EA1",
                "accession": "GCA_009746625.1",
                "taxid": 2576756,
                "species_taxid": 2576756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6819,
                "matched_fragments": 69,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caproiciproducens galactitolivorans",
                "strain": "strain=BS-1",
                "accession": "GCA_004768785.1",
                "taxid": 642589,
                "species_taxid": 642589,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6301,
                "matched_fragments": 71,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligaoa zhengdingensis",
                "strain": "strain=NSJ-31",
                "accession": "GCA_014384885.1",
                "taxid": 2763658,
                "species_taxid": 2763658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.203,
                "matched_fragments": 55,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_018712435.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "98.29",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002160025.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caccousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "99.23",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900752115.1",
                "gtdb_species": "s__Caccousia sp900752115",
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                "matched_fragments": 251,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caccousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018715025.1",
                "gtdb_species": "s__Caccousia avistercoris",
                "ani": 78.1491,
                "matched_fragments": 242,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caccousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002159845.1",
                "gtdb_species": "s__Anaeromassilibacillus stercoravium",
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                "matched_fragments": 112,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Anaeromassilibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.27",
                "mean_intra_species_af": "0.94",
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                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
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                "matched_fragments": 114,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Anaeromassilibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018712265.1",
                "gtdb_species": "s__Gallacutalibacter pullicola",
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                "matched_fragments": 140,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Gallacutalibacter",
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                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.02",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCA_905215105.1",
                "gtdb_species": "s__Heritagella sp905215105",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Heritagella",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_015667585.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_000752215.1",
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                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_000577335.1",
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                "matched_fragments": 72,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Clostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
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                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 8,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Acutalibacteraceae",
        "g__Caccousia",
        "s__Caccousia avicola"
    ],
    "_genome_taxon": [
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        "Caccousia",
        "avicola",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Caccousia",
        "s__Caccousia avicola",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Acutalibacteraceae",
        "Caccousia",
        "Caccousia",
        "avicola"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}