{
    "type": "genome",
    "identifier": "GCA_018712705.1",
    "organism": "Candidatus Aphodousia faecalis",
    "title": "Candidatus Aphodousia faecalis",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Quadram Institutte",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018712705.1",
        "bioproject": "PRJNA543206",
        "biosample": "SAMN15817170",
        "wgs_master": "DVGM00000000.1",
        "refseq_category": "na",
        "taxid": "2840675",
        "species_taxid": "2840675",
        "organism_name": "Candidatus Aphodousia faecalis",
        "infraspecific_name": "",
        "isolate": "ChiW13-1064",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/04",
        "asm_name": "ASM1871270v1",
        "submitter": "Quadram Institutte",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/712/705/GCA_018712705.1_ASM1871270v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-04",
    "dateModified": "2021-06-04",
    "datePublished": "2021-06-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Aphodousia faecalis"
        ],
        "sample_taxid": [
            "2840675"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.492 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1703889",
        "Number of Sequences": "65",
        "Longest Sequences (bp)": "102262",
        "N50 (bp)": "38066",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.4",
        "Number of CDSs": "1548",
        "Average Protein Length": "325.5",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000437635.1",
                "gtdb_species": "s__Aphodousia faecalis",
                "ani": 97.3168,
                "matched_fragments": 451,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.89",
                "min_intra_species_ani": "96.42",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905212345.1",
                "gtdb_species": "s__Aphodousia sp905212345",
                "ani": 92.4329,
                "matched_fragments": 439,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902388655.1",
                "gtdb_species": "s__Aphodousia sp902388655",
                "ani": 82.0472,
                "matched_fragments": 277,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018714755.1",
                "gtdb_species": "s__Aphodousia faecigallinarum",
                "ani": 80.8243,
                "matched_fragments": 219,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905201055.1",
                "gtdb_species": "s__Aphodousia sp905201055",
                "ani": 80.3745,
                "matched_fragments": 209,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016901835.1",
                "gtdb_species": "s__Aphodousia secunda_A",
                "ani": 80.3315,
                "matched_fragments": 265,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "97.42",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900545335.1",
                "gtdb_species": "s__Aphodousia sp900545335",
                "ani": 80.1055,
                "matched_fragments": 258,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900544345.1",
                "gtdb_species": "s__Aphodousia sp900544345",
                "ani": 79.973,
                "matched_fragments": 223,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900546995.1",
                "gtdb_species": "s__Aphodousia sp900546995",
                "ani": 79.2287,
                "matched_fragments": 121,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900553105.1",
                "gtdb_species": "s__Aphodousia sp900553105",
                "ani": 79.042,
                "matched_fragments": 114,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002329575.1",
                "gtdb_species": "s__Aphodousia sp002329575",
                "ani": 78.4936,
                "matched_fragments": 127,
                "total_fragments": 537,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aphodousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.48",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Aphodousia",
        "s__Aphodousia faecalis"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Aphodousia",
        "faecalis",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Aphodousia",
        "s__Aphodousia faecalis",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Aphodousia",
        "Aphodousia",
        "faecalis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}