{
    "type": "genome",
    "identifier": "GCA_018712905.1",
    "organism": "Candidatus Avoscillospira stercoripullorum",
    "title": "Candidatus Avoscillospira stercoripullorum",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Quadram Institutte",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018712905.1",
        "bioproject": "PRJNA543206",
        "biosample": "SAMN15816951",
        "wgs_master": "DVGD00000000.1",
        "refseq_category": "na",
        "taxid": "2840709",
        "species_taxid": "2840709",
        "organism_name": "Candidatus Avoscillospira stercoripullorum",
        "infraspecific_name": "",
        "isolate": "ChiHjej9B8-7071",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/04",
        "asm_name": "ASM1871290v1",
        "submitter": "Quadram Institutte",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/712/905/GCA_018712905.1_ASM1871290v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-04",
    "dateModified": "2021-06-04",
    "datePublished": "2021-06-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Avoscillospira stercoripullorum"
        ],
        "sample_taxid": [
            "2840709"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.518 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1829780",
        "Number of Sequences": "299",
        "Longest Sequences (bp)": "38374",
        "N50 (bp)": "6855",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.4",
        "Number of CDSs": "1445",
        "Average Protein Length": "313.8",
        "Coding Ratio (%)": "74.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "25",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_014982855.1",
                "taxid": 2779352,
                "species_taxid": 2779352,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=JCM 32125",
                "accession": "GCA_010508875.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.0521,
                "matched_fragments": 94,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=ATCC 29863",
                "accession": "GCA_000239295.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.8853,
                "matched_fragments": 94,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter welbionis",
                "strain": "strain=J115",
                "accession": "GCA_005121165.3",
                "taxid": 2093857,
                "species_taxid": 2093857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8842,
                "matched_fragments": 76,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vescimonas coprocola",
                "strain": "strain=MM50",
                "accession": "GCA_018408575.1",
                "taxid": 2714355,
                "species_taxid": 2714355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7418,
                "matched_fragments": 69,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter acutus",
                "strain": "strain=MSJ-2",
                "accession": "GCA_018919205.1",
                "taxid": 2841504,
                "species_taxid": 2841504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7169,
                "matched_fragments": 79,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vescimonas fastidiosa",
                "strain": "strain=MM35",
                "accession": "GCA_018326305.1",
                "taxid": 2714353,
                "species_taxid": 2714353,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5359,
                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium phoceensis",
                "strain": "strain=GD3",
                "accession": "GCA_001244495.1",
                "taxid": 1650661,
                "species_taxid": 1650661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3501,
                "matched_fragments": 70,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
                "strain": "strain=SRB-521-5-I",
                "accession": "GCA_004154955.1",
                "taxid": 1297617,
                "species_taxid": 1297617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3471,
                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
                "strain": "strain=DSM 26588",
                "accession": "GCA_024622565.1",
                "taxid": 1297617,
                "species_taxid": 1297617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3203,
                "matched_fragments": 57,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinimonas butyriciproducens",
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                "accession": "GCA_003096335.1",
                "taxid": 1297617,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1846,
                "matched_fragments": 61,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Evtepia gabavorous",
                "strain": "strain=KLE1738",
                "accession": "GCA_003425665.1",
                "taxid": 2211183,
                "species_taxid": 2211183,
                "relation_to_type": "type",
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                "ani": 77.1179,
                "matched_fragments": 54,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Evtepia gabavorous",
                "strain": "strain=KLE1738",
                "accession": "GCA_008121455.1",
                "taxid": 2211183,
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                "relation_to_type": "type",
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                "ani": 77.1179,
                "matched_fragments": 54,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018712905.1",
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                "matched_fragments": 448,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Avoscillospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.48",
                "min_intra_species_ani": "96.48",
                "mean_intra_species_af": "0.79",
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                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018712245.1",
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                "matched_fragments": 292,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Avoscillospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.26",
                "min_intra_species_ani": "96.26",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018713205.1",
                "gtdb_species": "s__Avoscillospira stercorigallinarum",
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                "matched_fragments": 286,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Avoscillospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016296235.1",
                "gtdb_species": "s__Avoscillospira sp016296235",
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                "matched_fragments": 176,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Avoscillospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_904395865.1",
                "gtdb_species": "s__Avoscillospira_A sp904395865",
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                "matched_fragments": 126,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Avoscillospira_A",
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                "mean_intra_species_ani": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Avoscillospira_A",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_017541995.1",
                "gtdb_species": "s__Faecousia sp017541995",
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            {
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_900549635.1",
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                "matched_fragments": 66,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-170",
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                "num_clustered_genomes": 4,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
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        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
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        "s__Avoscillospira stercoripullorum"
    ],
    "_genome_taxon": [
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        "Avoscillospira",
        "stercoripullorum",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__Avoscillospira",
        "s__Avoscillospira stercoripullorum",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Oscillospiraceae",
        "Avoscillospira",
        "Avoscillospira",
        "stercoripullorum"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}