{
    "type": "genome",
    "identifier": "GCA_018713425.1",
    "organism": "Candidatus Ornithocaccomicrobium faecavium",
    "title": "Candidatus Ornithocaccomicrobium faecavium",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Quadram Institutte",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018713425.1",
        "bioproject": "PRJNA543206",
        "biosample": "SAMN15816945",
        "wgs_master": "DVOT00000000.1",
        "refseq_category": "na",
        "taxid": "2840890",
        "species_taxid": "2840890",
        "organism_name": "Candidatus Ornithocaccomicrobium faecavium",
        "infraspecific_name": "",
        "isolate": "CHK183-6373",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/04",
        "asm_name": "ASM1871342v1",
        "submitter": "Quadram Institutte",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/713/425/GCA_018713425.1_ASM1871342v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-04",
    "dateModified": "2021-06-04",
    "datePublished": "2021-06-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Ornithocaccomicrobium faecavium"
        ],
        "sample_taxid": [
            "2840890"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.933 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 5.21,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3309908",
        "Number of Sequences": "266",
        "Longest Sequences (bp)": "57688",
        "N50 (bp)": "17466",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.0",
        "Number of CDSs": "2759",
        "Average Protein Length": "335.2",
        "Coding Ratio (%)": "83.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 5.21,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900754755.1",
                "gtdb_species": "s__Alectryocaccomicrobium faecavium",
                "ani": 97.6783,
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                "total_fragments": 973,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Alectryocaccomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "97.08",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018716755.1",
                "gtdb_species": "s__Alectryocaccomicrobium excrementavium",
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                "matched_fragments": 605,
                "total_fragments": 973,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Alectryocaccomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018716805.1",
                "gtdb_species": "s__Faecivicinus avistercoris",
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                "matched_fragments": 108,
                "total_fragments": 973,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Faecivicinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.88",
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                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018711655.1",
                "gtdb_species": "s__Pullichristensenella avicola",
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                "matched_fragments": 150,
                "total_fragments": 973,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Pullichristensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018712945.1",
                "gtdb_species": "s__Pullichristensenella stercorigallinarum",
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                "matched_fragments": 136,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Pullichristensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.18",
                "min_intra_species_ani": "99.18",
                "mean_intra_species_af": "0.88",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004563405.1",
                "gtdb_species": "s__SFTH01 sp004563405",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004554085.1",
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                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCA_004557125.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__UBA2862",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Pullichristensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
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        "growth_tmp": null,
        "optimum_tmp": null,
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        "genome_size": null,
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        "rRNA16S_genes": null,
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        "motility": null,
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        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
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        "vibrio_cell_shape": null,
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    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Christensenellales",
        "f__Aristaeellaceae",
        "g__Alectryocaccomicrobium",
        "s__Alectryocaccomicrobium faecavium"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Ornithocaccomicrobium",
        "faecavium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Christensenellales",
        "f__Aristaeellaceae",
        "g__Alectryocaccomicrobium",
        "s__Alectryocaccomicrobium faecavium",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Christensenellales",
        "Aristaeellaceae",
        "Alectryocaccomicrobium",
        "Alectryocaccomicrobium",
        "faecavium"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}