{
    "type": "genome",
    "identifier": "GCA_018716285.1",
    "organism": "Candidatus Merdivicinus faecavium",
    "title": "Candidatus Merdivicinus faecavium",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Quadram Institutte",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018716285.1",
        "bioproject": "PRJNA543206",
        "biosample": "SAMN15817036",
        "wgs_master": "DVKD00000000.1",
        "refseq_category": "na",
        "taxid": "2840868",
        "species_taxid": "2840868",
        "organism_name": "Candidatus Merdivicinus faecavium",
        "infraspecific_name": "",
        "isolate": "CHK186-19003",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/04",
        "asm_name": "ASM1871628v1",
        "submitter": "Quadram Institutte",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/716/285/GCA_018716285.1_ASM1871628v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-04",
    "dateModified": "2021-06-04",
    "datePublished": "2021-06-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Merdivicinus faecavium"
        ],
        "sample_taxid": [
            "2840868"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.747 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.48,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2658120",
        "Number of Sequences": "61",
        "Longest Sequences (bp)": "165208",
        "N50 (bp)": "53768",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.1",
        "Number of CDSs": "2503",
        "Average Protein Length": "313.0",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Provencibacterium massiliense",
                "strain": "strain=Marseille-P2780",
                "accession": "GCA_900169495.1",
                "taxid": 1841868,
                "species_taxid": 1841868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9293,
                "matched_fragments": 114,
                "total_fragments": 857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fumia xinanensis",
                "strain": "strain=NSJ-33",
                "accession": "GCA_014384905.1",
                "taxid": 2763659,
                "species_taxid": 2763659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7018,
                "matched_fragments": 90,
                "total_fragments": 857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerotruncus rubiinfantis",
                "strain": "strain=MT15",
                "accession": "GCA_900078395.1",
                "taxid": 1720200,
                "species_taxid": 1720200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6096,
                "matched_fragments": 64,
                "total_fragments": 857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium hattorii",
                "strain": "strain=APC922/41-1",
                "accession": "GCA_003287455.1",
                "taxid": 2935520,
                "species_taxid": 2935520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5333,
                "matched_fragments": 55,
                "total_fragments": 857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium gallinarum",
                "strain": "strain=JCM 17207",
                "accession": "GCA_022180365.1",
                "taxid": 2903556,
                "species_taxid": 2903556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5085,
                "matched_fragments": 77,
                "total_fragments": 857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Feifania hominis",
                "strain": "strain=BX7",
                "accession": "GCA_014384765.1",
                "taxid": 2763660,
                "species_taxid": 2763660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4741,
                "matched_fragments": 60,
                "total_fragments": 857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium phoceensis",
                "strain": "strain=GD3",
                "accession": "GCA_001244495.1",
                "taxid": 1650661,
                "species_taxid": 1650661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4214,
                "matched_fragments": 53,
                "total_fragments": 857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoflavonifractor gallinarum",
                "strain": "strain=DSM 107456",
                "accession": "GCA_014982855.1",
                "taxid": 2779352,
                "species_taxid": 2779352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2596,
                "matched_fragments": 70,
                "total_fragments": 857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=A2-165",
                "accession": "GCA_000162015.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9586,
                "matched_fragments": 52,
                "total_fragments": 857,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.48,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018716285.1",
                "gtdb_species": "s__Merdivicinus faecavium",
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                "matched_fragments": 853,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Merdivicinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "98.77",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018713245.1",
                "gtdb_species": "s__Merdivicinus intestinavium",
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                "matched_fragments": 368,
                "total_fragments": 857,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Merdivicinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018713335.1",
                "gtdb_species": "s__Merdivicinus intestinigallinarum",
                "ani": 80.0506,
                "matched_fragments": 357,
                "total_fragments": 857,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Merdivicinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018716725.1",
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                "matched_fragments": 314,
                "total_fragments": 857,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Merdivicinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "99.04",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_018712425.1",
                "gtdb_species": "s__Faecivivens stercoravium",
                "ani": 78.3503,
                "matched_fragments": 137,
                "total_fragments": 857,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecivivens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.86",
                "min_intra_species_ani": "97.02",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900555435.1",
                "gtdb_species": "s__Merdivicinus sp900555435",
                "ani": 78.2991,
                "matched_fragments": 170,
                "total_fragments": 857,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Merdivicinus",
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                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_905214265.1",
                "gtdb_species": "s__Merdivicinus sp905214265",
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                "matched_fragments": 219,
                "total_fragments": 857,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Merdivicinus",
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                "mean_intra_species_ani": "N/A",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UMGS856",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_900553255.1",
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            },
            {
                "accession": "GCF_904419005.1",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_905198155.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__RGIG4076",
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                "mean_intra_species_ani": "98.68",
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                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
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        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Ruminococcaceae",
        "g__Merdivicinus",
        "s__Merdivicinus faecavium"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Merdivicinus",
        "faecavium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Merdivicinus",
        "s__Merdivicinus faecavium",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Merdivicinus",
        "Merdivicinus",
        "faecavium"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}