{
    "type": "genome",
    "identifier": "GCA_018780065.1",
    "organism": "Microbacterium sp.",
    "title": "Microbacterium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Friedrich Schiller University Jena",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018780065.1",
        "bioproject": "PRJNA633367",
        "biosample": "SAMN16635747",
        "wgs_master": "JADMKD000000000.1",
        "refseq_category": "na",
        "taxid": "51671",
        "species_taxid": "51671",
        "organism_name": "Microbacterium sp.",
        "infraspecific_name": "",
        "isolate": "MAG_80",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/08",
        "asm_name": "ASM1878006v1",
        "submitter": "Friedrich Schiller University Jena",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/780/065/GCA_018780065.1_ASM1878006v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-08",
    "dateModified": "2021-06-08",
    "datePublished": "2021-06-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microbacterium sp."
        ],
        "sample_taxid": [
            "51671"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Hainich National Park, Hainich Critical Zone Exploratory"
        ],
        "sample_host_location_id": [],
        "data_size": "1.006 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3733155",
        "Number of Sequences": "25",
        "Longest Sequences (bp)": "626564",
        "N50 (bp)": "208478",
        "Gap Ratio (%)": "0.018751",
        "GCcontent (%)": "70.0",
        "Number of CDSs": "3540",
        "Average Protein Length": "322.2",
        "Coding Ratio (%)": "91.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Microbacterium enclense",
                "strain": "strain=NIO-1002",
                "accession": "GCA_001456955.1",
                "taxid": 993073,
                "species_taxid": 993073,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1435,
                "matched_fragments": 767,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium enclense",
                "strain": "strain=NIO-1002",
                "accession": "GCA_900096885.1",
                "taxid": 993073,
                "species_taxid": 993073,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1313,
                "matched_fragments": 768,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium testaceum",
                "strain": "strain=NBRC 12675",
                "accession": "GCA_006539145.1",
                "taxid": 2033,
                "species_taxid": 2033,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.7966,
                "matched_fragments": 741,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium proteolyticum",
                "strain": "strain=CECT 8356",
                "accession": "GCA_014192415.1",
                "taxid": 1572644,
                "species_taxid": 1572644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7829,
                "matched_fragments": 763,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium helvum",
                "strain": "strain=NEAU-LLC",
                "accession": "GCA_014779795.1",
                "taxid": 2773713,
                "species_taxid": 2773713,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7919,
                "matched_fragments": 562,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium hatanonis",
                "strain": "strain=JCM14558",
                "accession": "GCA_008017415.1",
                "taxid": 404366,
                "species_taxid": 404366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7775,
                "matched_fragments": 591,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium sulfonylureivorans",
                "strain": "strain=LAM7116",
                "accession": "GCA_003999995.1",
                "taxid": 2486854,
                "species_taxid": 2486854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6614,
                "matched_fragments": 541,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium imperiale",
                "strain": "strain=DSM 20530",
                "accession": "GCA_017876655.1",
                "taxid": 33884,
                "species_taxid": 33884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6466,
                "matched_fragments": 538,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium hominis",
                "strain": "strain=NBRC 15708",
                "accession": "GCA_001592125.1",
                "taxid": 162426,
                "species_taxid": 162426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.526,
                "matched_fragments": 549,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium gallinarum",
                "strain": "strain=Sa1CUA4",
                "accession": "GCA_014837165.1",
                "taxid": 2762209,
                "species_taxid": 2762209,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4628,
                "matched_fragments": 535,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium atlanticum",
                "strain": "strain=WY121",
                "accession": "GCA_015277815.1",
                "taxid": 2782168,
                "species_taxid": 2782168,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4588,
                "matched_fragments": 543,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium hibisci",
                "strain": "strain=CCTCC AB 2016180",
                "accession": "GCA_015278255.1",
                "taxid": 2036000,
                "species_taxid": 2036000,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4307,
                "matched_fragments": 560,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium pullorum",
                "strain": "strain=Sa4CUA7",
                "accession": "GCA_014836535.1",
                "taxid": 2762236,
                "species_taxid": 2762236,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3869,
                "matched_fragments": 509,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium yannicii",
                "strain": "strain=DSM 23203",
                "accession": "GCA_024055635.1",
                "taxid": 671622,
                "species_taxid": 671622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0744,
                "matched_fragments": 550,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_005774735.1",
                "gtdb_species": "s__Microbacterium sp005774735",
                "ani": 96.066,
                "matched_fragments": 929,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.07",
                "min_intra_species_ani": "96.07",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001984105.1",
                "gtdb_species": "s__Microbacterium sp001984105",
                "ani": 86.3417,
                "matched_fragments": 860,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "96.71",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004022425.1",
                "gtdb_species": "s__Microbacterium enclense_A",
                "ani": 86.2252,
                "matched_fragments": 820,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156455.1",
                "gtdb_species": "s__Microbacterium sp900156455",
                "ani": 86.2205,
                "matched_fragments": 884,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.72",
                "min_intra_species_ani": "96.66",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001619615.1",
                "gtdb_species": "s__Microbacterium sp001619615",
                "ani": 86.1686,
                "matched_fragments": 841,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000333395.1",
                "gtdb_species": "s__Microbacterium sp000333395",
                "ani": 86.0884,
                "matched_fragments": 694,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004366135.1",
                "gtdb_species": "s__Microbacterium sp004366135",
                "ani": 85.8548,
                "matched_fragments": 837,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007679045.1",
                "gtdb_species": "s__Microbacterium sp007679045",
                "ani": 84.4668,
                "matched_fragments": 775,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001476285.1",
                "gtdb_species": "s__Microbacterium testaceum_B",
                "ani": 84.2538,
                "matched_fragments": 752,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_008763945.1",
                "gtdb_species": "s__Microbacterium testaceum_G",
                "ani": 84.1784,
                "matched_fragments": 759,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000202635.1",
                "gtdb_species": "s__Microbacterium testaceum_F",
                "ani": 84.0212,
                "matched_fragments": 822,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.344,
        "cell_length": -0.025,
        "doubling_h": null,
        "growth_tmp": 28.643,
        "optimum_tmp": 29.019,
        "optimum_ph": 7.341,
        "genome_size": 3469503.118,
        "gc_content": 69.764,
        "coding_genes": 3206.916,
        "rRNA16S_genes": 1.75,
        "tRNA_genes": 50.166,
        "gram_stain": 1.0,
        "sporulation": 0.111,
        "motility": 0.289,
        "range_salinity": 1.0,
        "facultative_respiration": 0.012,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.987,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.977,
        "coccus_cell_shape": 0.022,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Microbacteriaceae",
        "g__Microbacterium",
        "s__Microbacterium sp005774735"
    ],
    "_genome_taxon": [
        "Microbacterium",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Microbacteriaceae",
        "g__Microbacterium",
        "s__Microbacterium sp005774735",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Microbacteriaceae",
        "Microbacterium",
        "Microbacterium",
        "sp005774735"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}