{ "type": "genome", "identifier": "GCA_018780075.1", "organism": "Hydrogenophaga sp.", "title": "Hydrogenophaga sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Friedrich Schiller University Jena", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018780075.1", "bioproject": "PRJNA633367", "biosample": "SAMN16635745", "wgs_master": "JADMKB000000000.1", "refseq_category": "na", "taxid": "1904254", "species_taxid": "1904254", "organism_name": "Hydrogenophaga sp.", "infraspecific_name": "", "isolate": "MAG_7", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/08", "asm_name": "ASM1878007v1", "submitter": "Friedrich Schiller University Jena", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/780/075/GCA_018780075.1_ASM1878007v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-08", "dateModified": "2021-06-08", "datePublished": "2021-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Hydrogenophaga sp." ], "sample_taxid": [ "1904254" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Hainich National Park, Hainich Critical Zone Exploratory" ], "sample_host_location_id": [], "data_size": "1.485 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.25, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5392536", "Number of Sequences": "191", "Longest Sequences (bp)": "344035", "N50 (bp)": "47440", "Gap Ratio (%)": "0.009643", "GCcontent (%)": "66.8", "Number of CDSs": "4972", "Average Protein Length": "315.8", "Coding Ratio (%)": "87.4", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hydrogenophaga aromaticivorans", "strain": "strain=D2P1", "accession": "GCA_013387465.1", "taxid": 2610898, "species_taxid": 2610898, "relation_to_type": "type", "validated": true, "ani": 86.4115, "matched_fragments": 1132, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga taeniospiralis", "strain": "strain=NBRC 102512", "accession": "GCA_001592305.1", "taxid": 65656, "species_taxid": 65656, "relation_to_type": "type", "validated": true, "ani": 85.7053, "matched_fragments": 1087, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga pseudoflava", "strain": "strain=NBRC 102511", "accession": "GCA_001592285.1", "taxid": 47421, "species_taxid": 47421, "relation_to_type": "type", "validated": true, "ani": 85.2065, "matched_fragments": 1082, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga flava", "strain": "strain=NBRC 102514", "accession": "GCA_001571145.1", "taxid": 65657, "species_taxid": 65657, "relation_to_type": "type", "validated": true, "ani": 85.103, "matched_fragments": 1158, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga palleronii", "strain": "strain=NBRC 102513", "accession": "GCA_001571225.1", "taxid": 65655, "species_taxid": 65655, "relation_to_type": "type", "validated": true, "ani": 82.9395, "matched_fragments": 815, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 82.3031, "matched_fragments": 804, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga borbori", "strain": "strain=LA-38", "accession": "GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 82.0096, "matched_fragments": 781, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=DSM 5680", "accession": "GCA_005938115.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 81.76, "matched_fragments": 782, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=S1", "accession": "GCA_000723405.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 81.7374, "matched_fragments": 793, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 80.0501, "matched_fragments": 654, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 79.7967, "matched_fragments": 431, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 79.768, "matched_fragments": 591, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 79.5728, "matched_fragments": 627, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax avenae subsp. avenae", "strain": "strain=ATCC 19860", "accession": "GCA_000176855.2", "taxid": 80870, "species_taxid": 80867, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5158, "matched_fragments": 582, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax oryzae", "strain": "strain=ATCC 19882", "accession": "GCA_000687165.1", "taxid": 862720, "species_taxid": 862720, "relation_to_type": "type", "validated": true, "ani": 79.4279, "matched_fragments": 605, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter caeni", "strain": "strain=NR2-3-3-1", "accession": "GCA_015354245.1", "taxid": 2784387, "species_taxid": 2784387, "relation_to_type": "type", "validated": true, "ani": 78.7646, "matched_fragments": 522, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 78.2448, "matched_fragments": 437, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 77.25, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_018780075.1", "gtdb_species": "s__Hydrogenophaga sp018780075", "ani": 100.0, "matched_fragments": 1690, "total_fragments": 1702, "gtdb_taxonomy": 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