{ "type": "genome", "identifier": "GCA_018780145.1", "organism": "Vitreoscilla sp.", "title": "Vitreoscilla sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Friedrich Schiller University Jena", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018780145.1", "bioproject": "PRJNA633367", "biosample": "SAMN16635744", "wgs_master": "JADMKA000000000.1", "refseq_category": "na", "taxid": "60", "species_taxid": "60", "organism_name": "Vitreoscilla sp.", "infraspecific_name": "", "isolate": "MAG_67", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/08", "asm_name": "ASM1878014v1", "submitter": "Friedrich Schiller University Jena", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/780/145/GCA_018780145.1_ASM1878014v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-08", "dateModified": "2021-06-08", "datePublished": "2021-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Vitreoscilla sp." ], "sample_taxid": [ "60" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Hainich National Park, Hainich Critical Zone Exploratory" ], "sample_host_location_id": [], "data_size": "1.523 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.53, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5571552", "Number of Sequences": "280", "Longest Sequences (bp)": "104204", "N50 (bp)": "34893", "Gap Ratio (%)": "0.011577", "GCcontent (%)": "68.7", "Number of CDSs": "4941", "Average Protein Length": "327.6", "Coding Ratio (%)": "87.2", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 81.2914, "matched_fragments": 743, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_008801845.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 81.2508, "matched_fragments": 721, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella azotifigens", "strain": "strain=DSM 21438", "accession": "GCA_006519715.1", "taxid": 513160, "species_taxid": 513160, "relation_to_type": "type", "validated": true, "ani": 81.2169, "matched_fragments": 613, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, "species_taxid": 2831643, "relation_to_type": "type", "validated": true, "ani": 81.0391, "matched_fragments": 689, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 80.6186, "matched_fragments": 646, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, 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"below_threshold" }, { "organism_name": "Azohydromonas aeria", "strain": "strain=CFCC 13393", "accession": "GCA_009760915.1", "taxid": 2590212, "species_taxid": 2590212, "relation_to_type": "type", "validated": true, "ani": 79.6625, "matched_fragments": 742, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium soli", "strain": "strain=SJQ9", "accession": "GCA_003933735.1", "taxid": 2493092, "species_taxid": 2493092, "relation_to_type": "type", "validated": true, "ani": 78.8303, "matched_fragments": 516, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 90.53, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018780145.1", "gtdb_species": "s__Ideonella sp018780145", "ani": 100.0, "matched_fragments": 1705, "total_fragments": 1715, "gtdb_taxonomy": 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