{ "type": "genome", "identifier": "GCA_018780435.1", "organism": "Myxococcales bacterium", "title": "Myxococcales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Friedrich Schiller University Jena", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018780435.1", "bioproject": "PRJNA633367", "biosample": "SAMN16635736", "wgs_master": "JADMJS000000000.1", "refseq_category": "na", "taxid": "2026763", "species_taxid": "2026763", "organism_name": "Myxococcales bacterium", "infraspecific_name": "", "isolate": "MAG_44", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/08", "asm_name": "ASM1878043v1", "submitter": "Friedrich Schiller University Jena", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/780/435/GCA_018780435.1_ASM1878043v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-08", "dateModified": "2021-06-08", "datePublished": "2021-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Myxococcales bacterium" ], "sample_taxid": [ "2026763" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Hainich National Park, Hainich Critical Zone Exploratory" ], "sample_host_location_id": [], "data_size": "2.592 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "9349076", "Number of Sequences": "783", "Longest Sequences (bp)": "105709", "N50 (bp)": "25001", "Gap Ratio (%)": "0.038892", "GCcontent (%)": "67.6", "Number of CDSs": "6229", "Average Protein Length": "403.2", "Coding Ratio (%)": "80.6", "Number of rRNAs": "0", "Number of tRNAs": "52", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vulgatibacter incomptus", "strain": "strain=DSM 27710", "accession": "GCA_001263175.1", "taxid": 1391653, "species_taxid": 1391653, "relation_to_type": "type", "validated": true, "ani": 75.2638, "matched_fragments": 125, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CFBP 1192", "accession": "GCA_024832295.1", "taxid": 54067, "species_taxid": 54067, "relation_to_type": "type", "validated": true, "ani": 75.0399, "matched_fragments": 65, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.0113, "matched_fragments": 213, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas silvestris", "strain": "strain=Red330", "accession": "GCA_014193515.1", "taxid": 2740184, "species_taxid": 2740184, "relation_to_type": "type", "validated": true, "ani": 74.9875, "matched_fragments": 69, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 74.9593, "matched_fragments": 144, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus hippei", "strain": "strain=DSM 566", "accession": "GCA_003201595.1", "taxid": 744406, "species_taxid": 744406, "relation_to_type": "type", "validated": true, "ani": 74.8936, "matched_fragments": 83, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000379485.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 74.892, "matched_fragments": 111, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=CGMCC 1.6105", "accession": "GCA_014645075.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 74.8896, "matched_fragments": 110, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000836695.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 74.8884, "matched_fragments": 112, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 74.8866, "matched_fragments": 253, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 74.8686, "matched_fragments": 193, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus trucidator", "strain": "strain=CA060A", "accession": "GCA_010894435.1", "taxid": 2709662, "species_taxid": 2709662, "relation_to_type": "type", "validated": true, "ani": 74.8614, "matched_fragments": 198, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 74.8513, "matched_fragments": 86, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Symbiobacterium terraclitae", "strain": "strain=DSM 27138", "accession": "GCA_017874315.1", "taxid": 557451, "species_taxid": 557451, "relation_to_type": "type", "validated": true, "ani": 74.8081, "matched_fragments": 60, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Symbiobacterium thermophilum", "strain": "strain=IAM14863", "accession": "GCA_000009905.1", "taxid": 2734, "species_taxid": 2734, "relation_to_type": "type", "validated": true, "ani": 74.7668, "matched_fragments": 50, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 74.7629, "matched_fragments": 102, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter peucedani", "strain": "strain=RP-AC37", "accession": "GCA_003634695.1", "taxid": 598650, "species_taxid": 598650, "relation_to_type": "type", "validated": true, "ani": 74.7471, "matched_fragments": 154, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 74.7449, "matched_fragments": 100, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas limicola", "strain": "strain=Red745", "accession": "GCA_014193675.1", "taxid": 2740186, "species_taxid": 2740186, "relation_to_type": "type", "validated": true, "ani": 74.7405, "matched_fragments": 55, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 74.739, "matched_fragments": 199, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nakamurella deserti", "strain": "strain=12Sc4-1", "accession": "GCA_003260015.1", "taxid": 2164074, "species_taxid": 2164074, "relation_to_type": "type", "validated": true, "ani": 74.7329, "matched_fragments": 111, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas saccharophila", "strain": "strain=DSM 654", "accession": "GCA_004342485.1", "taxid": 304, "species_taxid": 304, "relation_to_type": "type", "validated": true, "ani": 74.7219, "matched_fragments": 107, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis vancoresmycina", "strain": "strain=DSM 44592", "accession": "GCA_000388135.1", "taxid": 208444, "species_taxid": 208444, "relation_to_type": "type", "validated": true, "ani": 74.7203, "matched_fragments": 226, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis vancoresmycina", "strain": "strain=NRRL B-24208", "accession": "GCA_000716785.1", "taxid": 208444, "species_taxid": 208444, "relation_to_type": "type", "validated": true, "ani": 74.7142, "matched_fragments": 254, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces dulcitolivorans", "strain": "strain=SJ-25", "accession": 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2719, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__GCA-2863065;f__GCA-2863065;g__SXOO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_005776725.1", "gtdb_species": "s__SXOO01 sp005776725", "ani": 76.6785, "matched_fragments": 518, "total_fragments": 2719, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__GCA-2863065;f__GCA-2863065;g__SXOO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_006226565.1", "gtdb_species": "s__PHBI01 sp006226565", "ani": 75.4951, "matched_fragments": 373, "total_fragments": 2719, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__PHBI01;f__PHBI01;g__PHBI01", 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