{
    "type": "genome",
    "identifier": "GCA_018780685.1",
    "organism": "Sediminibacterium sp.",
    "title": "Sediminibacterium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Friedrich Schiller University Jena",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018780685.1",
        "bioproject": "PRJNA633367",
        "biosample": "SAMN16635724",
        "wgs_master": "JADMJG000000000.1",
        "refseq_category": "na",
        "taxid": "1917865",
        "species_taxid": "1917865",
        "organism_name": "Sediminibacterium sp.",
        "infraspecific_name": "",
        "isolate": "MAG_13",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/08",
        "asm_name": "ASM1878068v1",
        "submitter": "Friedrich Schiller University Jena",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/780/685/GCA_018780685.1_ASM1878068v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-08",
    "dateModified": "2021-06-08",
    "datePublished": "2021-06-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sediminibacterium sp."
        ],
        "sample_taxid": [
            "1917865"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Hainich National Park, Hainich Critical Zone Exploratory"
        ],
        "sample_host_location_id": [],
        "data_size": "0.937 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3319544",
        "Number of Sequences": "68",
        "Longest Sequences (bp)": "678393",
        "N50 (bp)": "159067",
        "Gap Ratio (%)": "0.015062",
        "GCcontent (%)": "36.3",
        "Number of CDSs": "2986",
        "Average Protein Length": "340.8",
        "Coding Ratio (%)": "92.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sediminibacterium salmoneum",
                "strain": "strain=NBRC 103935",
                "accession": "GCA_000511175.1",
                "taxid": 426421,
                "species_taxid": 426421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9436,
                "matched_fragments": 502,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacibacter cauensis",
                "strain": "strain=CGMCC 1.7271",
                "accession": "GCA_007830055.1",
                "taxid": 510947,
                "species_taxid": 510947,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1166,
                "matched_fragments": 67,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sediminibacterium goheungense",
                "strain": "strain=DSM 28323",
                "accession": "GCA_004361915.1",
                "taxid": 1086393,
                "species_taxid": 1086393,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7737,
                "matched_fragments": 128,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sediminibacterium ginsengisoli",
                "strain": "strain=DSM 22335",
                "accession": "GCA_900167075.1",
                "taxid": 413434,
                "species_taxid": 413434,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6707,
                "matched_fragments": 61,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea sandarakina",
                "strain": "strain=DSM 23241",
                "accession": "GCA_003254115.1",
                "taxid": 1004304,
                "species_taxid": 1004304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3005,
                "matched_fragments": 93,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnovirga soli",
                "strain": "strain=KCS-6",
                "accession": "GCA_013106755.1",
                "taxid": 2656915,
                "species_taxid": 2656915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2958,
                "matched_fragments": 68,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea flava",
                "strain": "strain=CCUG 51397",
                "accession": "GCA_001623405.1",
                "taxid": 714549,
                "species_taxid": 714549,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.1521,
                "matched_fragments": 90,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea lipotrueae",
                "strain": "strain=TMF_100",
                "accession": "GCA_019249625.1",
                "taxid": 2803817,
                "species_taxid": 2803817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1183,
                "matched_fragments": 92,
                "total_fragments": 1074,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001829005.1",
                "gtdb_species": "s__Sediminibacterium sp001829005",
                "ani": 96.1062,
                "matched_fragments": 932,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "96.16",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002281875.1",
                "gtdb_species": "s__Sediminibacterium sp002281875",
                "ani": 94.9604,
                "matched_fragments": 862,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017996795.1",
                "gtdb_species": "s__Sediminibacterium sp017996795",
                "ani": 89.6114,
                "matched_fragments": 550,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002281575.1",
                "gtdb_species": "s__Sediminibacterium sp002281575",
                "ani": 86.9078,
                "matched_fragments": 871,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002786355.1",
                "gtdb_species": "s__Sediminibacterium sp002786355",
                "ani": 84.2047,
                "matched_fragments": 775,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "98.29",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000508085.1",
                "gtdb_species": "s__Sediminibacterium sp000508085",
                "ani": 80.1821,
                "matched_fragments": 540,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000511175.1",
                "gtdb_species": "s__Sediminibacterium salmoneum",
                "ani": 79.9243,
                "matched_fragments": 505,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018335935.1",
                "gtdb_species": "s__CAIVPM01 sp018335935",
                "ani": 78.8486,
                "matched_fragments": 106,
                "total_fragments": 1074,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CAIVPM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.238,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 27.666,
        "optimum_ph": 6.375,
        "genome_size": 3712205.333,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.333,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Chitinophagaceae",
        "g__Sediminibacterium",
        "s__Sediminibacterium sp001829005"
    ],
    "_genome_taxon": [
        "Sediminibacterium",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Chitinophagaceae",
        "g__Sediminibacterium",
        "s__Sediminibacterium sp001829005",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Chitinophagales",
        "Chitinophagaceae",
        "Sediminibacterium",
        "Sediminibacterium",
        "sp001829005"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}