{
    "type": "genome",
    "identifier": "GCA_018820025.1",
    "organism": "Gammaproteobacteria bacterium",
    "title": "Gammaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018820025.1",
        "bioproject": "PRJNA627556",
        "biosample": "SAMN19298361",
        "wgs_master": "JAHJPA000000000.1",
        "refseq_category": "na",
        "taxid": "1913989",
        "species_taxid": "1913989",
        "organism_name": "Gammaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "Old_saline_planktonic.mb.57",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/09",
        "asm_name": "ASM1882002v1",
        "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/820/025/GCA_018820025.1_ASM1882002v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-09",
    "dateModified": "2021-06-09",
    "datePublished": "2021-06-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gammaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "1913989"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "1.305 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.52,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4542756",
        "Number of Sequences": "494",
        "Longest Sequences (bp)": "68053",
        "N50 (bp)": "13599",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.6",
        "Number of CDSs": "3752",
        "Average Protein Length": "317.0",
        "Coding Ratio (%)": "78.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Marinomonas lutimaris",
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                "species_taxid": 2846746,
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                "organism_name": "Marinomonas rhizomae",
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                "species_taxid": 491948,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas rhizomae",
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                "accession": "GCA_003721275.1",
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                "relation_to_type": "type",
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            {
                "organism_name": "Marinomonas foliarum",
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                "species_taxid": 491950,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas arctica",
                "strain": "strain=328",
                "accession": "GCA_003259225.1",
                "taxid": 383750,
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                "relation_to_type": "type",
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                "ani": 82.8513,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas alcarazii",
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                "accession": "GCA_003208215.1",
                "taxid": 491949,
                "species_taxid": 491949,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3932,
                "matched_fragments": 744,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas shanghaiensis",
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                "accession": "GCA_003259175.1",
                "taxid": 2202418,
                "species_taxid": 2202418,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas primoryensis",
                "strain": "strain=MPKMM3633",
                "accession": "GCA_013372285.1",
                "taxid": 178399,
                "species_taxid": 178399,
                "relation_to_type": "type",
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                "status": "below_threshold"
            }
        ],
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                "accession": "GCF_900129155.1",
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                "mean_intra_species_ani": "97.53",
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            {
                "accession": "GCF_018336955.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Marinomonadaceae;g__Marinomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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        "f__Marinomonadaceae",
        "g__Marinomonas",
        "s__Marinomonas polaris"
    ],
    "_genome_taxon": [
        "Gammaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Marinomonadaceae",
        "g__Marinomonas",
        "s__Marinomonas polaris",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Marinomonadaceae",
        "Marinomonas",
        "Marinomonas",
        "polaris"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}