{
    "type": "genome",
    "identifier": "GCA_018820875.1",
    "organism": "Gammaproteobacteria bacterium",
    "title": "Gammaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018820875.1",
        "bioproject": "PRJNA627556",
        "biosample": "SAMN19298316",
        "wgs_master": "JAHJNH000000000.1",
        "refseq_category": "na",
        "taxid": "1913989",
        "species_taxid": "1913989",
        "organism_name": "Gammaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "Old_saline.mb.98",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/09",
        "asm_name": "ASM1882087v1",
        "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/820/875/GCA_018820875.1_ASM1882087v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-09",
    "dateModified": "2021-06-09",
    "datePublished": "2021-06-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gammaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "1913989"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "1.444 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 92.59,
        "contamination": 7.45,
        "strain_heterogeneity": 22.22,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5217275",
        "Number of Sequences": "327",
        "Longest Sequences (bp)": "107718",
        "N50 (bp)": "23215",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.1",
        "Number of CDSs": "4652",
        "Average Protein Length": "317.5",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Variovorax paradoxus",
                "strain": "strain=NBRC 15149",
                "accession": "GCA_001591365.1",
                "taxid": 34073,
                "species_taxid": 34073,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.9017,
                "matched_fragments": 856,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax beijingensis",
                "strain": "strain=502",
                "accession": "GCA_003951285.1",
                "taxid": 2496117,
                "species_taxid": 2496117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8891,
                "matched_fragments": 856,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax boronicumulans",
                "strain": "strain=NBRC 103145",
                "accession": "GCA_001591345.1",
                "taxid": 436515,
                "species_taxid": 436515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4535,
                "matched_fragments": 797,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax guangxiensis",
                "strain": "strain=DSM 27352",
                "accession": "GCA_003952165.1",
                "taxid": 1775474,
                "species_taxid": 1775474,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3679,
                "matched_fragments": 848,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax gossypii",
                "strain": "strain=DSM 100435",
                "accession": "GCA_003965815.1",
                "taxid": 1679495,
                "species_taxid": 1679495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2986,
                "matched_fragments": 687,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax soli",
                "strain": "strain=NBRC 106424",
                "accession": "GCA_001591385.1",
                "taxid": 376815,
                "species_taxid": 376815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6809,
                "matched_fragments": 747,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter tataouinensis",
                "strain": "strain=TTB310",
                "accession": "GCA_000215705.1",
                "taxid": 94132,
                "species_taxid": 94132,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.351,
                "matched_fragments": 527,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xylophilus ampelinus",
                "strain": "strain=CFBP 1192",
                "accession": "GCA_024832295.1",
                "taxid": 54067,
                "species_taxid": 54067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2179,
                "matched_fragments": 476,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter pinisoli",
                "strain": "strain=MAH-25",
                "accession": "GCA_009758015.1",
                "taxid": 2682844,
                "species_taxid": 2682844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0449,
                "matched_fragments": 572,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter humi",
                "strain": "strain=18x22-1",
                "accession": "GCA_004681975.1",
                "taxid": 2530451,
                "species_taxid": 2530451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0035,
                "matched_fragments": 524,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax anthurii",
                "strain": "strain=CFPB 3232",
                "accession": "GCA_003269065.1",
                "taxid": 78229,
                "species_taxid": 78229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9509,
                "matched_fragments": 490,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9225,
                "matched_fragments": 535,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter lithotrophicus",
                "strain": "strain=RBP-1",
                "accession": "GCA_012184415.1",
                "taxid": 2606681,
                "species_taxid": 2606681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9025,
                "matched_fragments": 510,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax avenae subsp. avenae",
                "strain": "strain=ATCC 19860",
                "accession": "GCA_000176855.2",
                "taxid": 80870,
                "species_taxid": 80867,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.8891,
                "matched_fragments": 504,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax oryzae",
                "strain": "strain=ATCC 19882",
                "accession": "GCA_000687165.1",
                "taxid": 862720,
                "species_taxid": 862720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7707,
                "matched_fragments": 495,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter agri",
                "strain": "strain=G-1-2-2",
                "accession": "GCA_012927085.1",
                "taxid": 2728837,
                "species_taxid": 2728837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7106,
                "matched_fragments": 620,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malikia spinosa",
                "strain": "strain=83",
                "accession": "GCA_002980625.1",
                "taxid": 86180,
                "species_taxid": 86180,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2702,
                "matched_fragments": 335,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 92.59,
            "contamination": 7.45,
            "strain_heterogeneity": 22.22
        },
        "gtdb_result": [
            {
                "accession": "GCA_018820395.1",
                "gtdb_species": "s__Variovorax sp018820395",
                "ani": 99.8298,
                "matched_fragments": 1467,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018614955.1",
                "gtdb_species": "s__Variovorax paradoxus_J",
                "ani": 82.4251,
                "matched_fragments": 854,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018614915.1",
                "gtdb_species": "s__Variovorax paradoxus_K",
                "ani": 82.4006,
                "matched_fragments": 840,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003984645.1",
                "gtdb_species": "s__Variovorax sp003984645",
                "ani": 82.3531,
                "matched_fragments": 844,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900101545.1",
                "gtdb_species": "s__Variovorax sp900101545",
                "ani": 82.2857,
                "matched_fragments": 872,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_901827185.1",
                "gtdb_species": "s__Variovorax sp901827185",
                "ani": 82.1161,
                "matched_fragments": 861,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.21",
                "min_intra_species_ani": "98.21",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009765735.1",
                "gtdb_species": "s__Variovorax sp009765735",
                "ani": 81.6635,
                "matched_fragments": 805,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000463015.1",
                "gtdb_species": "s__Variovorax paradoxus_E",
                "ani": 81.62,
                "matched_fragments": 878,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_901827175.1",
                "gtdb_species": "s__Variovorax sp901827175",
                "ani": 81.606,
                "matched_fragments": 859,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014170375.1",
                "gtdb_species": "s__Variovorax sp014170375",
                "ani": 81.5225,
                "matched_fragments": 789,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000282635.1",
                "gtdb_species": "s__Variovorax sp000282635",
                "ani": 81.3759,
                "matched_fragments": 793,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.21",
                "min_intra_species_ani": "96.21",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001899795.1",
                "gtdb_species": "s__Variovorax sp001899795",
                "ani": 81.3422,
                "matched_fragments": 864,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_017161115.1",
                "gtdb_species": "s__Variovorax sp017161115",
                "ani": 81.3246,
                "matched_fragments": 850,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002754375.1",
                "gtdb_species": "s__Variovorax sp002754375",
                "ani": 81.3128,
                "matched_fragments": 818,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.39",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900115685.1",
                "gtdb_species": "s__Variovorax sp900115685",
                "ani": 81.2241,
                "matched_fragments": 869,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000184745.1",
                "gtdb_species": "s__Variovorax paradoxus_C",
                "ani": 81.211,
                "matched_fragments": 840,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001577265.1",
                "gtdb_species": "s__Variovorax sp001577265",
                "ani": 80.8394,
                "matched_fragments": 744,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Variovorax",
        "s__Variovorax sp018820395"
    ],
    "_genome_taxon": [
        "Gammaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Variovorax",
        "s__Variovorax sp018820395",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Variovorax",
        "Variovorax",
        "sp018820395"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}