{ "type": "genome", "identifier": "GCA_018821545.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018821545.1", "bioproject": "PRJNA627556", "biosample": "SAMN19298282", "wgs_master": "JAHJLZ000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "Old_saline.mb.173", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/09", "asm_name": "ASM1882154v1", "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/821/545/GCA_018821545.1_ASM1882154v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-09", "dateModified": "2021-06-09", "datePublished": "2021-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.880 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.07, "contamination": 17.19, "strain_heterogeneity": 88.89, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3205175", "Number of Sequences": "299", "Longest Sequences (bp)": "51489", "N50 (bp)": "15290", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.6", "Number of CDSs": "2890", "Average Protein Length": "301.9", "Coding Ratio (%)": "81.7", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas mediterranea", "strain": "strain=DSM 14878", "accession": "GCA_014196125.1", "taxid": 74329, "species_taxid": 74329, "relation_to_type": "type", "validated": true, "ani": 95.0143, "matched_fragments": 762, "total_fragments": 913, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevundimonas aurantiaca", "strain": "strain=DSM 4731", "accession": "GCA_014199955.1", "taxid": 74316, "species_taxid": 74316, "relation_to_type": "type", "validated": true, "ani": 88.2901, "matched_fragments": 704, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vesicularis", "strain": "strain=NBRC 12165", "accession": "GCA_001592205.1", "taxid": 41276, "species_taxid": 41276, "relation_to_type": "suspected-type", "validated": true, "ani": 86.3951, "matched_fragments": 649, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas huaxiensis", "strain": "strain=090558", "accession": "GCA_014218725.1", "taxid": 2725493, "species_taxid": 2725493, "relation_to_type": "type", "validated": true, "ani": 86.3201, "matched_fragments": 635, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 85.3066, "matched_fragments": 638, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas nasdae", "strain": "strain=JCM 11415", "accession": "GCA_016654005.1", "taxid": 172043, "species_taxid": 172043, "relation_to_type": "type", "validated": true, "ani": 85.0789, "matched_fragments": 639, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas bullata", "strain": "strain=HAMBI_262", "accession": "GCA_003350205.1", "taxid": 13160, "species_taxid": 13160, "relation_to_type": "type", "validated": true, "ani": 82.687, "matched_fragments": 561, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 82.0198, "matched_fragments": 520, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas subvibrioides", "strain": "strain=ATCC 15264", "accession": "GCA_000144605.1", "taxid": 74313, "species_taxid": 74313, "relation_to_type": "type", "validated": true, "ani": 81.3648, "matched_fragments": 537, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas basaltis", "strain": "strain=DSM 25335", "accession": "GCA_014202075.1", "taxid": 472166, "species_taxid": 472166, "relation_to_type": "type", "validated": true, "ani": 81.2353, "matched_fragments": 473, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vitisensis", "strain": "strain=GR-TSA-9", "accession": "GCA_016656965.1", "taxid": 2800818, "species_taxid": 2800818, "relation_to_type": "type", "validated": true, "ani": 80.2254, "matched_fragments": 484, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, "species_taxid": 1763816, "relation_to_type": "type", "validated": true, "ani": 78.2337, "matched_fragments": 345, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedomonas mirosovicensis", "strain": "strain=A1X5R2", "accession": "GCA_022569295.1", "taxid": 2908641, "species_taxid": 2908641, "relation_to_type": "type", "validated": true, "ani": 76.2393, "matched_fragments": 113, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.07, "contamination": 17.19, "strain_heterogeneity": 88.89 }, "gtdb_result": [ { "accession": "GCF_011064825.1", "gtdb_species": "s__Brevundimonas mediterranea_A", "ani": 97.4334, "matched_fragments": 795, "total_fragments": 913, "gtdb_taxonomy": 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