{ "type": "genome", "identifier": "GCA_018828085.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018828085.1", "bioproject": "PRJNA627556", "biosample": "SAMN19298673", "wgs_master": "JAHJWQ000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "OSS_B.mb.41", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/09", "asm_name": "ASM1882808v1", "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/828/085/GCA_018828085.1_ASM1882808v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-09", "dateModified": "2021-06-09", "datePublished": "2021-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.261 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 29.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4471133", "Number of Sequences": "615", "Longest Sequences (bp)": "35141", "N50 (bp)": "9797", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "3674", "Average Protein Length": "303.5", "Coding Ratio (%)": "74.8", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas cuatrocienegasensis", "strain": "strain=CIP 109853", "accession": "GCA_900110925.1", "taxid": 543360, "species_taxid": 543360, "relation_to_type": "type", "validated": true, "ani": 94.7023, "matched_fragments": 998, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tumuqii", "strain": "strain=LAMW06", "accession": "GCA_013184545.1", "taxid": 2715755, "species_taxid": 2715755, "relation_to_type": "type", "validated": true, "ani": 81.9684, "matched_fragments": 677, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas benzenivorans", "strain": "strain=DSM 8628", "accession": "GCA_900100495.1", "taxid": 556533, "species_taxid": 556533, "relation_to_type": "type", "validated": true, "ani": 81.9544, "matched_fragments": 699, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas borbori", "strain": "strain=DSM 17834", "accession": "GCA_900115555.1", "taxid": 289003, "species_taxid": 289003, "relation_to_type": "type", "validated": true, "ani": 81.7652, "matched_fragments": 627, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 81.6484, "matched_fragments": 636, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas peli", "strain": "strain=DSM 17833", "accession": "GCA_900099645.1", "taxid": 592361, "species_taxid": 592361, "relation_to_type": "type", "validated": true, "ani": 81.5057, "matched_fragments": 610, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ullengensis", "strain": "strain=UL070", "accession": "GCA_014174475.1", "taxid": 2759166, "species_taxid": 2759166, "relation_to_type": "type", "validated": true, "ani": 80.8475, "matched_fragments": 592, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas argentinensis", "strain": "strain=CCUG 50743", "accession": "GCA_008801645.1", "taxid": 289370, "species_taxid": 289370, "relation_to_type": "type", "validated": true, "ani": 80.6657, "matched_fragments": 599, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 80.5531, "matched_fragments": 575, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NBRC 14159", "accession": "GCA_000467105.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 80.4618, "matched_fragments": 575, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas punonensis", "strain": "strain=CECT 8089", "accession": "GCA_900142655.1", "taxid": 1220495, "species_taxid": 1220495, "relation_to_type": "type", "validated": true, "ani": 80.133, "matched_fragments": 587, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guineae", "strain": 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