{ "type": "genome", "identifier": "GCA_018828245.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018828245.1", "bioproject": "PRJNA627556", "biosample": "SAMN19298666", "wgs_master": "JAHJWJ000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "OSS_B.mb.3", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/09", "asm_name": "ASM1882824v1", "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/828/245/GCA_018828245.1_ASM1882824v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-09", "dateModified": "2021-06-09", "datePublished": "2021-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.544 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5529038", "Number of Sequences": "62", "Longest Sequences (bp)": "870953", "N50 (bp)": "200598", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.8", "Number of CDSs": "5340", "Average Protein Length": "303.4", "Coding Ratio (%)": "87.9", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudorhizobium endolithicum", "strain": "strain=JC140", "accession": "GCA_902153245.3", "taxid": 1191678, "species_taxid": 1191678, "relation_to_type": "type", "validated": true, "ani": 81.9029, "matched_fragments": 901, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium banfieldiae", "strain": "strain=NT-26", "accession": "GCA_000967425.1", "taxid": 1125847, "species_taxid": 1125847, "relation_to_type": "type", "validated": true, "ani": 81.6134, "matched_fragments": 874, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium halotolerans", "strain": "strain=AB21", "accession": "GCA_902153235.3", "taxid": 1233081, "species_taxid": 1233081, "relation_to_type": "type", "validated": true, "ani": 81.5166, "matched_fragments": 881, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium flavum", "strain": "strain=YW14", "accession": "GCA_002000045.1", "taxid": 1335061, "species_taxid": 1335061, "relation_to_type": "type", "validated": true, "ani": 81.4504, "matched_fragments": 860, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium flavum", "strain": "strain=YW14", "accession": "GCA_902502825.2", "taxid": 1335061, "species_taxid": 1335061, "relation_to_type": "type", "validated": true, "ani": 81.4118, "matched_fragments": 869, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium flavum", "strain": "strain=DSM 102134", "accession": "GCA_014201495.1", "taxid": 1335061, "species_taxid": 1335061, "relation_to_type": "type", "validated": true, "ani": 81.3634, "matched_fragments": 860, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium vignae", "strain": "strain=CCBAU 05176", "accession": "GCA_000732195.1", "taxid": 690585, "species_taxid": 690585, "relation_to_type": "type", "validated": true, "ani": 80.7369, "matched_fragments": 850, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium galegae", "strain": "strain=HAMBI 540", "accession": "GCA_000731315.1", "taxid": 399, "species_taxid": 399, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5152, "matched_fragments": 849, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium pseudoryzae", "strain": "strain=DSM 19479", "accession": "GCA_011046245.1", "taxid": 379684, "species_taxid": 379684, "relation_to_type": "type", "validated": true, "ani": 80.2684, "matched_fragments": 783, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 80.1742, "matched_fragments": 659, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella granuli", "strain": "strain=DSM 18401", "accession": "GCA_004341885.1", "taxid": 323621, "species_taxid": 323621, "relation_to_type": "type", "validated": true, "ani": 80.0731, "matched_fragments": 704, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 80.045, "matched_fragments": 701, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 80.0223, "matched_fragments": 595, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium alkalisoli", "strain": "strain=DSM 21826", "accession": "GCA_002968635.1", "taxid": 528178, "species_taxid": 528178, "relation_to_type": "type", "validated": true, "ani": 79.9859, "matched_fragments": 737, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium rosettiformans", "strain": "strain=DSM 26376", "accession": "GCA_014202175.1", "taxid": 1368430, "species_taxid": 1368430, "relation_to_type": "type", "validated": true, "ani": 79.7406, "matched_fragments": 642, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium rosettiformans", "strain": "strain=W3", "accession": "GCA_004912135.1", "taxid": 1368430, "species_taxid": 1368430, "relation_to_type": "type", "validated": true, "ani": 79.7397, "matched_fragments": 645, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium huautlense", "strain": "strain=DSM 21817", "accession": "GCA_002968575.1", "taxid": 67774, "species_taxid": 67774, "relation_to_type": "type", "validated": true, "ani": 79.6029, "matched_fragments": 722, "total_fragments": 1815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, 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