{ "type": "genome", "identifier": "GCA_018828285.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018828285.1", "bioproject": "PRJNA627556", "biosample": "SAMN19298665", "wgs_master": "JAHJWI000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "OSS_B.mb.27", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/09", "asm_name": "ASM1882828v1", "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/828/285/GCA_018828285.1_ASM1882828v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-09", "dateModified": "2021-06-09", "datePublished": "2021-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.001 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.23, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3555738", "Number of Sequences": "864", "Longest Sequences (bp)": "23591", "N50 (bp)": "4499", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "2776", "Average Protein Length": "270.4", "Coding Ratio (%)": "63.3", "Number of rRNAs": "1", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Loktanella atrilutea", "strain": "strain=DSM 29326", "accession": "GCA_900128995.1", "taxid": 366533, "species_taxid": 366533, "relation_to_type": "type", "validated": true, "ani": 85.9298, "matched_fragments": 487, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella fryxellensis", "strain": "strain=DSM 16213", "accession": "GCA_900110065.1", "taxid": 245187, "species_taxid": 245187, "relation_to_type": "type", 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163, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola algae", "strain": "strain=Lw-13e", "accession": "GCA_003590145.2", "taxid": 1537215, "species_taxid": 1537215, "relation_to_type": "type", "validated": true, "ani": 77.6044, "matched_fragments": 147, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia marisminoris", "strain": "strain=CECT 7066", "accession": "GCA_900172315.1", "taxid": 315423, "species_taxid": 315423, "relation_to_type": "type", "validated": true, "ani": 77.3477, "matched_fragments": 141, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 77.3362, "matched_fragments": 170, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 77.2356, "matched_fragments": 170, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jannaschia formosa", "strain": "strain=12N15", "accession": "GCA_003340555.1", "taxid": 2259592, "species_taxid": 2259592, "relation_to_type": "type", "validated": true, "ani": 77.1531, "matched_fragments": 170, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia litorea", "strain": "strain=DSM 29433", "accession": "GCA_900114675.1", "taxid": 1123755, "species_taxid": 1123755, "relation_to_type": "type", "validated": true, "ani": 76.6706, "matched_fragments": 96, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia maricola", "strain": 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