{ "type": "genome", "identifier": "GCA_018828435.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018828435.1", "bioproject": "PRJNA627556", "biosample": "SAMN19298651", "wgs_master": "JAHJVU000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "OSS_A.mb.36", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/09", "asm_name": "ASM1882843v1", "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/828/435/GCA_018828435.1_ASM1882843v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-09", "dateModified": "2021-06-09", "datePublished": "2021-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.320 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.82, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, 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"matched_fragments": 972, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararheinheimera mesophila", "strain": "strain=IITR13", "accession": "GCA_003862465.1", "taxid": 1547515, "species_taxid": 1547515, "relation_to_type": "type", "validated": true, "ani": 83.6969, "matched_fragments": 941, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararheinheimera mesophila", "strain": "strain=IITR-13", "accession": "GCA_000986865.1", "taxid": 1547515, "species_taxid": 1547515, "relation_to_type": "type", "validated": true, "ani": 83.6763, "matched_fragments": 913, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera riviphila", "strain": "strain=KYPC3", "accession": "GCA_004005945.1", "taxid": 1834037, "species_taxid": 1834037, "relation_to_type": "type", "validated": true, "ani": 78.0275, "matched_fragments": 330, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera pacifica", "strain": "strain=DSM 17616", "accession": "GCA_900108485.1", "taxid": 173990, "species_taxid": 173990, "relation_to_type": "type", "validated": true, "ani": 77.0784, "matched_fragments": 255, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera pleomorphica", "strain": "strain=PKS7", "accession": "GCA_011634895.1", "taxid": 2703963, "species_taxid": 2703963, "relation_to_type": "type", "validated": true, "ani": 76.9576, "matched_fragments": 208, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera baltica", "strain": "strain=DSM 14885", "accession": "GCA_000425345.1", "taxid": 67576, "species_taxid": 67576, "relation_to_type": "type", "validated": true, "ani": 76.8164, "matched_fragments": 176, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" } ], 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"mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000986865.1", "gtdb_species": "s__Pararheinheimera mesophila", "ani": 83.6832, "matched_fragments": 912, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pararheinheimera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, 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"\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }