{
    "type": "genome",
    "identifier": "GCA_018828685.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018828685.1",
        "bioproject": "PRJNA627556",
        "biosample": "SAMN19298640",
        "wgs_master": "JAHJVJ000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "OSL_B.mb.9",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/09",
        "asm_name": "ASM1882868v1",
        "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/828/685/GCA_018828685.1_ASM1882868v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-09",
    "dateModified": "2021-06-09",
    "datePublished": "2021-06-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.822 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 67.94,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2878726",
        "Number of Sequences": "750",
        "Longest Sequences (bp)": "16606",
        "N50 (bp)": "4147",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.3",
        "Number of CDSs": "1920",
        "Average Protein Length": "297.5",
        "Coding Ratio (%)": "59.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Desulfobacula phenolica",
                "strain": "strain=DSM 3384",
                "accession": "GCA_900105645.1",
                "taxid": 90732,
                "species_taxid": 90732,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1413,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfospira joergensenii",
                "strain": "strain=DSM 10085",
                "accession": "GCA_000420085.1",
                "taxid": 53329,
                "species_taxid": 53329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7759,
                "matched_fragments": 58,
                "total_fragments": 543,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfotignum phosphitoxidans",
                "strain": "strain=DSM 13687",
                "accession": "GCA_000350545.1",
                "taxid": 190898,
                "species_taxid": 190898,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5407,
                "matched_fragments": 53,
                "total_fragments": 543,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfotignum balticum",
                "strain": "strain=DSM 7044",
                "accession": "GCA_000421285.1",
                "taxid": 115781,
                "species_taxid": 115781,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4963,
                "matched_fragments": 59,
                "total_fragments": 543,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 67.94,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCA_018821535.1",
                "gtdb_species": "s__Desulfobacula sp018821535",
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                "matched_fragments": 533,
                "total_fragments": 543,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014237455.1",
                "gtdb_species": "s__Desulfobacula sp014237455",
                "ani": 77.1719,
                "matched_fragments": 91,
                "total_fragments": 543,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003647385.1",
                "gtdb_species": "s__Desulfobacula sp003647385",
                "ani": 77.0884,
                "matched_fragments": 55,
                "total_fragments": 543,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011390085.1",
                "gtdb_species": "s__Desulfobacula sp011390085",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018645325.1",
                "gtdb_species": "s__Desulfobacula sp018645325",
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                "matched_fragments": 72,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.49",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_011390635.1",
                "gtdb_species": "s__Desulfotignum sp011390635",
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                "matched_fragments": 73,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfotignum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016743945.1",
                "gtdb_species": "s__NBML01 sp016743945",
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                "matched_fragments": 76,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__NBML01",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_018816605.1",
                "gtdb_species": "s__NBML01 sp018816605",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_013151635.1",
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                "status": "-"
            },
            {
                "accession": "GCA_018702715.1",
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                "matched_fragments": 50,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012031875.1",
                "gtdb_species": "s__Desulfobacula sp012031875",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobacteria",
        "o__Desulfobacterales",
        "f__Desulfobacteraceae",
        "g__Desulfobacula",
        "s__Desulfobacula sp018821535"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobacteria",
        "o__Desulfobacterales",
        "f__Desulfobacteraceae",
        "g__Desulfobacula",
        "s__Desulfobacula sp018821535",
        "Bacteria",
        "Desulfobacterota",
        "Desulfobacteria",
        "Desulfobacterales",
        "Desulfobacteraceae",
        "Desulfobacula",
        "Desulfobacula",
        "sp018821535"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}