{ "type": "genome", "identifier": "GCA_018830795.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018830795.1", "bioproject": "PRJNA627556", "biosample": "SAMN19298546", "wgs_master": "JAHJRT000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "OS_PC_MetaG.mb.163", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/10", "asm_name": "ASM1883079v1", "submitter": "Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/830/795/GCA_018830795.1_ASM1883079v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-10", "dateModified": "2021-06-10", "datePublished": "2021-06-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.525 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 88.28, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5371638", "Number of Sequences": "653", "Longest Sequences (bp)": "79365", "N50 (bp)": "10603", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.3", "Number of CDSs": "4250", "Average Protein Length": "315.7", "Coding Ratio (%)": "74.9", "Number of rRNAs": "1", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfobacula phenolica", "strain": "strain=DSM 3384", "accession": "GCA_900105645.1", "taxid": 90732, "species_taxid": 90732, "relation_to_type": "type", "validated": true, "ani": 79.5173, "matched_fragments": 488, "total_fragments": 1470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobacula toluolica", "strain": "strain=Tol2", "accession": "GCA_000307105.1", "taxid": 28223, "species_taxid": 28223, "relation_to_type": "type", "validated": true, "ani": 79.4688, "matched_fragments": 487, "total_fragments": 1470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfotignum phosphitoxidans", "strain": "strain=DSM 13687", "accession": "GCA_000350545.1", "taxid": 190898, "species_taxid": 190898, "relation_to_type": "type", "validated": true, "ani": 76.72, "matched_fragments": 115, "total_fragments": 1470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfotignum balticum", "strain": "strain=DSM 7044", "accession": "GCA_000421285.1", "taxid": 115781, "species_taxid": 115781, "relation_to_type": "type", "validated": true, "ani": 76.6855, "matched_fragments": 135, "total_fragments": 1470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfospira joergensenii", "strain": "strain=DSM 10085", "accession": "GCA_000420085.1", "taxid": 53329, "species_taxid": 53329, "relation_to_type": "type", "validated": true, "ani": 76.52, "matched_fragments": 143, "total_fragments": 1470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfocicer vacuolatum", "strain": "strain=DSM 3385", "accession": "GCA_900176365.1", "taxid": 2298, "species_taxid": 2298, "relation_to_type": "type", "validated": true, "ani": 76.3901, "matched_fragments": 84, "total_fragments": 1470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulforapulum autotrophicum", "strain": "strain=HRM2", "accession": "GCA_000020365.1", "taxid": 2296, "species_taxid": 2296, "relation_to_type": "type", "validated": true, "ani": 76.2567, "matched_fragments": 71, "total_fragments": 1470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobacter latus", "strain": "strain=AcRS2", "accession": "GCA_013389365.1", "taxid": 2292, "species_taxid": 2292, "relation_to_type": "type", "validated": true, "ani": 75.9714, "matched_fragments": 78, "total_fragments": 1470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobacter postgatei", "strain": 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