{ "type": "genome", "identifier": "GCA_018882485.1", "organism": "Rhodoferax sp.", "title": "Rhodoferax sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Instituto de Quimica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018882485.1", "bioproject": "PRJNA369078", "biosample": "SAMN11867349", "wgs_master": "VERU00000000.1", "refseq_category": "na", "taxid": "50421", "species_taxid": "50421", "organism_name": "Rhodoferax sp.", "infraspecific_name": "", "isolate": "ZLKRG51", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/14", "asm_name": "ASM1888248v1", "submitter": "Instituto de Quimica", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/882/485/GCA_018882485.1_ASM1888248v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-14", "dateModified": "2021-06-14", "datePublished": "2021-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodoferax sp." ], "sample_taxid": [ "50421" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Sao Paulo Zoo" ], "sample_host_location_id": [], "data_size": "0.900 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.79, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3204443", "Number of Sequences": "645", "Longest Sequences (bp)": "22230", "N50 (bp)": "6231", "Gap Ratio (%)": "0.000312", "GCcontent (%)": "66.8", "Number of CDSs": "2425", "Average Protein Length": "306.9", "Coding Ratio (%)": "69.7", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ramlibacter tataouinensis", "strain": "strain=TTB310", "accession": "GCA_000215705.1", "taxid": 94132, "species_taxid": 94132, "relation_to_type": "type", "validated": true, "ani": 79.7912, "matched_fragments": 285, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter aquaticus", "strain": "strain=LMG 30558", "accession": "GCA_015159745.1", "taxid": 2780094, "species_taxid": 2780094, "relation_to_type": "type", "validated": true, "ani": 79.4229, "matched_fragments": 276, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 79.1092, "matched_fragments": 294, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 78.9275, "matched_fragments": 308, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga pseudoflava", "strain": "strain=NBRC 102511", "accession": "GCA_001592285.1", "taxid": 47421, "species_taxid": 47421, "relation_to_type": "type", "validated": true, "ani": 78.8825, "matched_fragments": 274, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 78.8005, "matched_fragments": 308, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax soli", "strain": "strain=DSM 21634", "accession": "GCA_003337555.1", "taxid": 545864, "species_taxid": 545864, "relation_to_type": "type", "validated": true, "ani": 78.743, "matched_fragments": 303, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter rhizophilus", "strain": "strain=CCTCC AB2015357", "accession": "GCA_004681965.1", "taxid": 1781167, "species_taxid": 1781167, "relation_to_type": "type", "validated": true, "ani": 78.6952, "matched_fragments": 270, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax aquiterrae", "strain": "strain=KCTC 23314", "accession": "GCA_014652235.1", "taxid": 747304, "species_taxid": 747304, "relation_to_type": "type", "validated": true, "ani": 78.6672, "matched_fragments": 309, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax beijingensis", "strain": "strain=502", "accession": "GCA_003951285.1", "taxid": 2496117, "species_taxid": 2496117, "relation_to_type": "type", "validated": true, "ani": 78.6012, "matched_fragments": 289, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax citrulli", "strain": "strain=DSM 17060", "accession": "GCA_900100305.1", "taxid": 80869, "species_taxid": 80869, "relation_to_type": "type", "validated": true, "ani": 78.5947, "matched_fragments": 248, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax anthurii", "strain": "strain=CFPB 3232", "accession": "GCA_003269065.1", "taxid": 78229, "species_taxid": 78229, "relation_to_type": "type", "validated": true, "ani": 78.5261, "matched_fragments": 255, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax konjaci", "strain": "strain=DSM 7481", "accession": "GCA_900112675.1", "taxid": 32040, "species_taxid": 32040, "relation_to_type": "type", "validated": true, "ani": 78.4762, "matched_fragments": 235, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melaminivora alkalimesophila", "strain": "strain=CY1", "accession": "GCA_000282995.1", "taxid": 1165852, "species_taxid": 1165852, "relation_to_type": "type", "validated": true, "ani": 78.2696, "matched_fragments": 174, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malikia spinosa", "strain": "strain=83", "accession": "GCA_002980625.1", "taxid": 86180, "species_taxid": 86180, "relation_to_type": "type", "validated": true, "ani": 78.2215, "matched_fragments": 211, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas fonticaldi", "strain": "strain=AT-A2", "accession": "GCA_007556755.1", "taxid": 1101373, "species_taxid": 1101373, "relation_to_type": "type", "validated": true, "ani": 78.2146, "matched_fragments": 210, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas sediminis", "strain": "strain=YIM 72259", "accession": "GCA_007556605.1", "taxid": 2588941, "species_taxid": 2588941, "relation_to_type": "type", "validated": true, "ani": 78.0353, "matched_fragments": 201, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas taiwanensis", "strain": "strain=LMG 22826", "accession": "GCA_020162115.1", "taxid": 307486, "species_taxid": 307486, "relation_to_type": "type", "validated": true, "ani": 77.9026, "matched_fragments": 182, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas taiwanensis", "strain": "strain=I1-1", "accession": "GCA_007556675.1", "taxid": 307486, "species_taxid": 307486, "relation_to_type": "type", "validated": true, "ani": 77.8023, "matched_fragments": 186, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax ferrireducens", "strain": "strain=DSM 15236", "accession": "GCA_000013605.1", "taxid": 192843, "species_taxid": 192843, "relation_to_type": "type", "validated": true, "ani": 77.6826, "matched_fragments": 213, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas alkaliphilus", "strain": "strain=YIM 72238", "accession": "GCA_007556595.1", "taxid": 2588942, "species_taxid": 2588942, "relation_to_type": "type", "validated": true, "ani": 77.6613, "matched_fragments": 168, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax antarcticus", "strain": "strain=DSM 24876", "accession": "GCA_001955735.1", "taxid": 81479, "species_taxid": 81479, "relation_to_type": "type", 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"num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013334205.1", "gtdb_species": "s__Hylemonella sp013334205", "ani": 79.2925, "matched_fragments": 283, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hylemonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002633085.1", "gtdb_species": "s__Hylemonella sp002633085", "ani": 79.2412, "matched_fragments": 232, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hylemonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.79", "min_intra_species_ani": "96.79", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002127215.1", "gtdb_species": "s__Hydrogenophaga sp002127215", "ani": 79.237, "matched_fragments": 269, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001797315.1", "gtdb_species": "s__Hylemonella sp001797315", "ani": 79.2151, "matched_fragments": 277, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hylemonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013693755.1", "gtdb_species": "s__Tibeticola sp013693755", "ani": 79.1658, "matched_fragments": 260, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Tibeticola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.98", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013778345.1", "gtdb_species": "s__Ramlibacter sp013778345", "ani": 79.0777, "matched_fragments": 297, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ramlibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { 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"gtdb_species": "s__JAABQG01 sp016721925", "ani": 78.8847, "matched_fragments": 272, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAABQG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_014489595.1", "gtdb_species": "s__Acidovorax_F monticola", "ani": 78.8775, "matched_fragments": 276, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001422445.1", "gtdb_species": 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