{ "type": "genome", "identifier": "GCA_018882695.1", "organism": "Polynucleobacter sp.", "title": "Polynucleobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Instituto de Quimica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018882695.1", "bioproject": "PRJNA369078", "biosample": "SAMN11867345", "wgs_master": "VERL00000000.1", "refseq_category": "na", "taxid": "2029855", "species_taxid": "2029855", "organism_name": "Polynucleobacter sp.", "infraspecific_name": "", "isolate": "ZLKRG41", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/14", "asm_name": "ASM1888269v1", "submitter": "Instituto de Quimica", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/882/695/GCA_018882695.1_ASM1888269v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-14", "dateModified": "2021-06-14", "datePublished": "2021-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Polynucleobacter sp." ], "sample_taxid": [ "2029855" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Sao Paulo Zoo" ], "sample_host_location_id": [], "data_size": "0.478 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1654592", "Number of Sequences": "83", "Longest Sequences (bp)": "98564", "N50 (bp)": "30333", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.8", "Number of CDSs": "1623", "Average Protein Length": "304.4", "Coding Ratio (%)": "89.6", "Number of rRNAs": "2", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter acidiphobus", "strain": "strain=MWH-PoolGreenA3", "accession": "GCA_003065385.1", "taxid": 556053, "species_taxid": 556053, "relation_to_type": "type", "validated": true, "ani": 85.8054, "matched_fragments": 446, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter difficilis", "strain": "strain=AM-8B5", "accession": "GCA_003065365.1", "taxid": 556054, "species_taxid": 556054, "relation_to_type": "type", "validated": true, "ani": 77.593, "matched_fragments": 102, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter antarcticus", "strain": "strain=LimPoW16", "accession": "GCA_013307245.1", "taxid": 1743162, "species_taxid": 1743162, "relation_to_type": "type", "validated": true, "ani": 77.5393, "matched_fragments": 87, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter paludilacus", "strain": "strain=MWH-Mekk-C3", "accession": "GCA_018687595.1", "taxid": 1855895, "species_taxid": 1855895, "relation_to_type": "type", "validated": true, "ani": 77.4954, "matched_fragments": 89, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter parvulilacunae", "strain": "strain=Ross1-W9", "accession": "GCA_018881715.1", "taxid": 1855631, "species_taxid": 1855631, "relation_to_type": "type", "validated": true, "ani": 77.4591, "matched_fragments": 79, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter alcilacus", "strain": "strain=UK-Pondora-W15", "accession": "GCA_018881545.1", "taxid": 1819739, "species_taxid": 1819739, "relation_to_type": "type", "validated": true, "ani": 77.2956, "matched_fragments": 90, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter sphagniphilus", "strain": "strain=MWH-Weng1-1", "accession": "GCA_001953355.1", "taxid": 1743169, "species_taxid": 1743169, "relation_to_type": "type", "validated": true, "ani": 77.2696, "matched_fragments": 83, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter nymphae", "strain": "strain=AP-Mumm-500A-B3", "accession": "GCA_018882155.1", "taxid": 2081043, "species_taxid": 2081043, "relation_to_type": "type", "validated": true, "ani": 77.2516, "matched_fragments": 94, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter duraquae", "strain": "strain=MWH-MoK4", "accession": "GCA_000973625.1", "taxid": 1835254, "species_taxid": 1835254, "relation_to_type": "type", "validated": true, "ani": 77.2038, "matched_fragments": 86, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hirudinilacicola", "strain": "strain=MWH-EgelM1-30-B4", "accession": "GCA_002192535.1", "taxid": 1743166, "species_taxid": 1743166, "relation_to_type": "type", "validated": true, "ani": 77.1633, "matched_fragments": 96, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hallstattensis", "strain": "strain=MWH-Hall10", "accession": "GCA_018881835.1", "taxid": 1855586, "species_taxid": 1855586, "relation_to_type": "type", "validated": true, "ani": 77.1318, "matched_fragments": 90, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter meluiroseus", "strain": "strain=AP-Melu-1000-B4", "accession": "GCA_900205755.1", "taxid": 1938814, "species_taxid": 1938814, "relation_to_type": "type", "validated": true, "ani": 77.0831, "matched_fragments": 76, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter aenigmaticus", "strain": "strain=MWH-K35W1", "accession": "GCA_002206635.1", "taxid": 1743164, "species_taxid": 1743164, "relation_to_type": "type", "validated": true, "ani": 77.039, "matched_fragments": 82, "total_fragments": 512, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018687475.1", "gtdb_species": "s__Polynucleobacter sp009928245", "ani": 97.8307, "matched_fragments": 498, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": "GCA_016867965.1", "gtdb_species": "s__Polynucleobacter sp016867965", "ani": 94.6176, "matched_fragments": 399, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003065385.1", "gtdb_species": "s__Polynucleobacter acidiphobus", "ani": 85.8054, "matched_fragments": 446, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002359975.1", "gtdb_species": "s__Polynucleobacter sp002359975", "ani": 79.4535, "matched_fragments": 123, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "97.93", "mean_intra_species_af": "0.70", "min_intra_species_af": "0.67", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_009924985.1", "gtdb_species": "s__Polynucleobacter sp009924985", "ani": 78.5758, "matched_fragments": 165, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002292975.1", "gtdb_species": "s__Polynucleobacter sp002292975", "ani": 78.3652, "matched_fragments": 205, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.63", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_018882055.1", "gtdb_species": "s__Polynucleobacter sp018882055", "ani": 77.5218, "matched_fragments": 91, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018688095.1", "gtdb_species": "s__Polynucleobacter sp018688095", "ani": 77.4658, "matched_fragments": 91, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018881575.1", "gtdb_species": "s__Polynucleobacter sp018881575", "ani": 77.3153, "matched_fragments": 89, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002192535.1", "gtdb_species": "s__Polynucleobacter hirudinilacicola", "ani": 77.1633, "matched_fragments": 96, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018882295.1", "gtdb_species": "s__Polynucleobacter sp018882295", "ani": 77.1361, "matched_fragments": 83, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016462905.1", "gtdb_species": "s__Polynucleobacter sp016462905", "ani": 77.0374, "matched_fragments": 101, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018882085.1", "gtdb_species": "s__Polynucleobacter sp018882085", "ani": 76.904, "matched_fragments": 104, "total_fragments": 512, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.45, "cell_length": -0.029, "doubling_h": null, "growth_tmp": 25.5, "optimum_tmp": 20.0, "optimum_ph": 6.2, "genome_size": 1985362.708, "gc_content": 46.363, "coding_genes": 1918.652, "rRNA16S_genes": 1.0, "tRNA_genes": 37.981, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.25, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.75, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.8, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.2, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Polynucleobacter", "s__Polynucleobacter sp009928245" ], "_genome_taxon": [ "Polynucleobacter", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Polynucleobacter", "s__Polynucleobacter sp009928245", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Polynucleobacter", "Polynucleobacter", "sp009928245" ], "_meo": [ { "id": "MEO_0000737", "label": "lake water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }