{ "type": "genome", "identifier": "GCA_018882835.1", "organism": "Limnohabitans sp.", "title": "Limnohabitans sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Instituto de Quimica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018882835.1", "bioproject": "PRJNA369078", "biosample": "SAMN11867315", "wgs_master": "VERE00000000.1", "refseq_category": "na", "taxid": "1907725", "species_taxid": "1907725", "organism_name": "Limnohabitans sp.", "infraspecific_name": "", "isolate": "ZLKRG32", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/14", "asm_name": "ASM1888283v1", "submitter": "Instituto de Quimica", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/882/835/GCA_018882835.1_ASM1888283v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-14", "dateModified": "2021-06-14", "datePublished": "2021-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Limnohabitans sp." ], "sample_taxid": [ "1907725" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Sao Paulo Zoo" ], "sample_host_location_id": [], "data_size": "0.925 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.75, "contamination": 5.09, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3280773", "Number of Sequences": "107", "Longest Sequences (bp)": "182879", "N50 (bp)": "49155", "Gap Ratio (%)": "0.003048", "GCcontent (%)": "59.5", "Number of CDSs": "3051", "Average Protein Length": "324.2", "Coding Ratio (%)": "90.5", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 78.8991, "matched_fragments": 324, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 78.6077, "matched_fragments": 360, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, 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true, "ani": 78.4119, "matched_fragments": 285, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax kalamii", "strain": "strain=KNDSW-TSA6", "accession": "GCA_002245625.1", "taxid": 2004485, "species_taxid": 2004485, "relation_to_type": "type", "validated": true, "ani": 78.3854, "matched_fragments": 312, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=DSM 5680", "accession": "GCA_005938115.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 78.3648, "matched_fragments": 264, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 78.3621, "matched_fragments": 258, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=S1", "accession": "GCA_000723405.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 78.3493, "matched_fragments": 271, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga borbori", "strain": "strain=LA-38", "accession": "GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 78.2942, "matched_fragments": 282, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga flava", "strain": "strain=NBRC 102514", "accession": "GCA_001571145.1", "taxid": 65657, "species_taxid": 65657, "relation_to_type": "type", "validated": true, "ani": 78.2595, "matched_fragments": 287, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 78.227, "matched_fragments": 275, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=DSM 22694", "accession": "GCA_001955715.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 78.1931, "matched_fragments": 258, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=ED16", "accession": "GCA_000498435.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 78.1875, "matched_fragments": 261, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax 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"taxid": 1207057, "species_taxid": 1207057, "relation_to_type": "type", "validated": true, "ani": 78.1126, "matched_fragments": 265, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas naphthalenivorans", "strain": "strain=CJ2", "accession": "GCA_000015505.1", "taxid": 216465, "species_taxid": 216465, "relation_to_type": "type", "validated": true, "ani": 78.0471, "matched_fragments": 254, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas terrae", "strain": "strain=NBRC 106524", "accession": "GCA_001544075.1", "taxid": 673548, "species_taxid": 673548, "relation_to_type": "type", "validated": true, "ani": 78.0365, "matched_fragments": 252, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter algicola", "strain": "strain=CrO1", "accession": "GCA_016641735.1", "taxid": 2795217, "species_taxid": 2795217, "relation_to_type": 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77.9282, "matched_fragments": 230, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia testudinis", "strain": "strain=27C", "accession": "GCA_017498525.1", "taxid": 2816950, "species_taxid": 2816950, "relation_to_type": "type", "validated": true, "ani": 77.8672, "matched_fragments": 262, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter agri", "strain": "strain=G-1-2-2", "accession": "GCA_012927085.1", "taxid": 2728837, "species_taxid": 2728837, "relation_to_type": "type", "validated": true, "ani": 77.7496, "matched_fragments": 285, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira suum", "strain": "strain=SC1-8", "accession": "GCA_003008595.1", "taxid": 2109915, "species_taxid": 2109915, "relation_to_type": "type", "validated": true, "ani": 77.6956, "matched_fragments": 238, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas fluminis", "strain": "strain=CJ34", "accession": "GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", "validated": true, "ani": 77.4062, "matched_fragments": 220, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rivicola pingtungensis", "strain": "strain=DSM 29661", "accession": "GCA_003201855.1", "taxid": 1054498, "species_taxid": 1054498, "relation_to_type": "type", "validated": true, "ani": 76.5819, "matched_fragments": 84, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 93.75, "contamination": 5.09, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_018882835.1", "gtdb_species": "s__Limnohabitans sp018882835", "ani": 100.0, "matched_fragments": 1036, "total_fragments": 1039, "gtdb_taxonomy": 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