{ "type": "genome", "identifier": "GCA_018883385.1", "organism": "Rhodocyclaceae bacterium", "title": "Rhodocyclaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Instituto de Quimica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018883385.1", "bioproject": "PRJNA369078", "biosample": "SAMN11867347", "wgs_master": "VEQD00000000.1", "refseq_category": "na", "taxid": "1898103", "species_taxid": "1898103", "organism_name": "Rhodocyclaceae bacterium", "infraspecific_name": "", "isolate": "ZLKRG05", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/14", "asm_name": "ASM1888338v1", "submitter": "Instituto de Quimica", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/883/385/GCA_018883385.1_ASM1888338v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-14", "dateModified": "2021-06-14", "datePublished": "2021-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodocyclaceae bacterium" ], "sample_taxid": [ "1898103" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Sao Paulo Zoo" ], "sample_host_location_id": [], "data_size": "0.411 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 82.51, "contamination": 7.41, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1424034", "Number of Sequences": "108", "Longest Sequences (bp)": "90746", "N50 (bp)": "32170", "Gap Ratio (%)": "0.105335", "GCcontent (%)": "57.1", "Number of CDSs": "1340", "Average Protein Length": "307.4", "Coding Ratio (%)": "86.8", "Number of rRNAs": "1", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fluviibacter phosphoraccumulans", "strain": "strain=SHINM1", "accession": "GCA_016110345.1", "taxid": 1751046, "species_taxid": 1751046, "relation_to_type": "type", "validated": true, "ani": 79.6151, "matched_fragments": 198, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azonexus hydrophilus", "strain": "strain=DSM 23864", "accession": "GCA_000429605.1", "taxid": 418702, "species_taxid": 418702, "relation_to_type": "type", "validated": true, "ani": 78.1314, "matched_fragments": 76, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azonexus fungiphilus", "strain": "strain=DSM 23841", "accession": "GCA_003634965.1", "taxid": 146940, "species_taxid": 146940, "relation_to_type": "type", "validated": true, "ani": 77.8024, "matched_fragments": 81, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospira oryzae", "strain": "strain=DSM 21223", "accession": "GCA_004217225.1", "taxid": 146939, "species_taxid": 146939, "relation_to_type": "type", "validated": true, "ani": 77.6813, "matched_fragments": 61, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dechloromonas denitrificans", "strain": "strain=ATCC BAA-841", "accession": "GCA_001551835.1", "taxid": 281362, "species_taxid": 281362, "relation_to_type": "type", "validated": true, "ani": 77.572, "matched_fragments": 79, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_009469755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 77.4339, "matched_fragments": 68, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_014197755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 77.4238, "matched_fragments": 69, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dechloromonas hortensis", "strain": "strain=MA-1", "accession": "GCA_009469765.1", "taxid": 337779, "species_taxid": 337779, "relation_to_type": "type", "validated": true, "ani": 77.3045, "matched_fragments": 85, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 77.2279, "matched_fragments": 58, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 77.1309, "matched_fragments": 57, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niveibacterium microcysteis", "strain": "strain=HC41", "accession": "GCA_017161445.1", "taxid": 2811415, "species_taxid": 2811415, "relation_to_type": "type", "validated": true, "ani": 77.0681, "matched_fragments": 50, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 82.51, "contamination": 7.41, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_018883385.1", "gtdb_species": "s__Fluviibacter sp018883385", "ani": 99.9999, "matched_fragments": 418, "total_fragments": 418, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Fluviibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018883265.1", "gtdb_species": "s__Fluviibacter sp018883265", "ani": 81.3065, "matched_fragments": 256, "total_fragments": 418, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Fluviibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016110345.1", "gtdb_species": "s__Fluviibacter phosphoraccumulans", "ani": 79.6151, "matched_fragments": 198, "total_fragments": 418, "gtdb_taxonomy": 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"Rhodocyclaceae", "Fluviibacter", "Fluviibacter", "sp018883385" ], "_meo": [ { "id": "MEO_0000737", "label": "lake water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }