{ "type": "genome", "identifier": "GCA_018883455.1", "organism": "Limnohabitans sp.", "title": "Limnohabitans sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Instituto de Quimica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018883455.1", "bioproject": "PRJNA369078", "biosample": "SAMN11867322", "wgs_master": "VEQC00000000.1", "refseq_category": "na", "taxid": "1907725", "species_taxid": "1907725", "organism_name": "Limnohabitans sp.", "infraspecific_name": "", "isolate": "ZLKRG03", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/14", "asm_name": "ASM1888345v1", "submitter": "Instituto de Quimica", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/883/455/GCA_018883455.1_ASM1888345v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-14", "dateModified": "2021-06-14", "datePublished": "2021-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Limnohabitans sp." ], "sample_taxid": [ "1907725" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Sao Paulo Zoo" ], "sample_host_location_id": [], "data_size": "0.760 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2688080", "Number of Sequences": "333", "Longest Sequences (bp)": "56983", "N50 (bp)": "11457", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.3", "Number of CDSs": "2306", "Average Protein Length": "305.5", "Coding Ratio (%)": "78.6", "Number of rRNAs": "1", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 78.1679, "matched_fragments": 216, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia beijingensis", "strain": "strain=GCS-AN-3", "accession": "GCA_013423955.1", "taxid": 1207057, "species_taxid": 1207057, "relation_to_type": "type", "validated": true, "ani": 77.8909, "matched_fragments": 178, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 77.8554, "matched_fragments": 195, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 77.8052, "matched_fragments": 224, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 77.7592, "matched_fragments": 237, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax citrulli", "strain": "strain=DSM 17060", "accession": "GCA_900100305.1", "taxid": 80869, "species_taxid": 80869, "relation_to_type": "type", "validated": true, "ani": 77.7001, "matched_fragments": 171, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=NBRC 13960", "accession": "GCA_003568725.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 77.6878, "matched_fragments": 182, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax boronicumulans", "strain": "strain=NBRC 103145", "accession": "GCA_001591345.1", "taxid": 436515, "species_taxid": 436515, "relation_to_type": "type", "validated": true, "ani": 77.6663, "matched_fragments": 197, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax caeni", "strain": "strain=R-24608", "accession": "GCA_001298675.1", "taxid": 343013, "species_taxid": 343013, "relation_to_type": "type", "validated": true, "ani": 77.6594, "matched_fragments": 184, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans planktonicus", "strain": "strain=II-D5", "accession": "GCA_001270065.2", "taxid": 540060, "species_taxid": 540060, "relation_to_type": "type", "validated": true, "ani": 77.6425, "matched_fragments": 230, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax caeni", "strain": "strain=R-24608", "accession": "GCA_900116825.1", "taxid": 343013, "species_taxid": 343013, "relation_to_type": "type", "validated": true, "ani": 77.6264, "matched_fragments": 177, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 77.622, "matched_fragments": 201, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas perlucida", "strain": "strain=HX2-24", "accession": "GCA_007655255.1", "taxid": 2590786, "species_taxid": 2590786, "relation_to_type": "type", "validated": true, "ani": 77.6185, "matched_fragments": 160, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=DSM 1837", "accession": "GCA_004341365.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 77.6103, "matched_fragments": 188, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax soli", "strain": "strain=DSM 25157", "accession": "GCA_900107605.1", "taxid": 592050, "species_taxid": 592050, "relation_to_type": "type", "validated": true, "ani": 77.5059, "matched_fragments": 183, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax oryzae", "strain": "strain=ATCC 19882", "accession": "GCA_000687165.1", "taxid": 862720, "species_taxid": 862720, "relation_to_type": "type", "validated": true, "ani": 77.4725, "matched_fragments": 167, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga palleronii", "strain": "strain=NBRC 102513", "accession": "GCA_001571225.1", "taxid": 65655, "species_taxid": 65655, "relation_to_type": "type", "validated": true, "ani": 77.4715, "matched_fragments": 211, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melaminivora alkalimesophila", "strain": "strain=DSM 26006", "accession": "GCA_003182375.1", "taxid": 1165852, "species_taxid": 1165852, "relation_to_type": "type", "validated": true, "ani": 77.4594, "matched_fragments": 154, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax avenae subsp. avenae", "strain": "strain=ATCC 19860", "accession": "GCA_000176855.2", "taxid": 80870, "species_taxid": 80867, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4476, "matched_fragments": 180, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax radicis", "strain": "strain=N35", "accession": "GCA_000204195.2", "taxid": 758826, "species_taxid": 758826, "relation_to_type": "type", "validated": true, "ani": 77.4445, "matched_fragments": 172, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melaminivora alkalimesophila", "strain": "strain=CY1", "accession": "GCA_000282995.1", "taxid": 1165852, "species_taxid": 1165852, "relation_to_type": "type", "validated": true, "ani": 77.3993, "matched_fragments": 120, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, 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true, "ani": 77.223, "matched_fragments": 171, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas vulgaris", "strain": "strain=DSM 100911", "accession": "GCA_003337425.1", "taxid": 1031594, "species_taxid": 1031594, "relation_to_type": "type", "validated": true, "ani": 77.1939, "matched_fragments": 164, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter caeni", "strain": "strain=NR2-3-3-1", "accession": "GCA_015354245.1", "taxid": 2784387, "species_taxid": 2784387, "relation_to_type": "type", "validated": true, "ani": 77.1263, "matched_fragments": 160, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 77.0655, "matched_fragments": 153, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella brevitalea", "strain": "strain=DSM 7029", "accession": "GCA_001017435.1", "taxid": 413882, "species_taxid": 413882, "relation_to_type": "type", "validated": true, "ani": 77.0156, "matched_fragments": 128, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, "species_taxid": 2831643, "relation_to_type": "type", "validated": true, "ani": 76.9237, "matched_fragments": 137, "total_fragments": 723, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018883455.1", "gtdb_species": "s__Limnohabitans sp018883455", "ani": 100.0, "matched_fragments": 710, "total_fragments": 723, "gtdb_taxonomy": 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